Strain Fitness in Pseudomonas putida KT2440 around PP_2480

Experiment: 3-methyl-1-butanol 0.25 vol% (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-1-butanol 0.25 vol% (C)
2,826,888	+		PP_2479	0.25	+0.1
2,826,889	-		PP_2479	0.25	+0.1
2,826,889	-		PP_2479	0.25	+1.6
2,826,891	+		PP_2479	0.25	-0.2
2,826,906	+		PP_2479	0.26	+0.0
2,826,907	-		PP_2479	0.26	-0.6
2,826,907	-		PP_2479	0.26	-0.7
2,826,908	+		PP_2479	0.26	-3.1
2,826,909	-		PP_2479	0.26	+2.4
2,826,958	-		PP_2479	0.30	+0.6
2,827,120	-		PP_2479	0.43	-1.5
2,827,233	+		PP_2479	0.53	-1.5
2,827,234	-		PP_2479	0.53	-0.1
2,827,288	+		PP_2479	0.57	-1.4
2,827,288	+		PP_2479	0.57	-1.2
2,827,289	-		PP_2479	0.57	+0.4
2,827,289	-		PP_2479	0.57	+2.1
2,827,296	+		PP_2479	0.58	+2.2
2,827,296	+		PP_2479	0.58	+0.1
2,827,296	+		PP_2479	0.58	-4.6
2,827,297	-		PP_2479	0.58	-1.4
2,827,673	+		PP_2479	0.89	+0.7
2,827,674	-		PP_2479	0.89	-2.4
2,827,695	+				+1.9
2,827,695	+				-2.0
2,827,696	-				-1.4
2,827,698	-				-2.3
2,827,730	+				+0.6
2,827,730	+				+2.7
2,827,730	+				-1.9
2,827,731	-				-0.6
2,827,902	-				-0.3
2,827,902	-				+0.2
2,828,059	+		PP_2480	0.19	-3.4
2,828,060	-		PP_2480	0.19	-0.6
2,828,060	-		PP_2480	0.19	+1.7
2,828,262	-		PP_2480	0.36	+1.0
2,828,262	-		PP_2480	0.36	+0.9
2,828,597	+		PP_2480	0.64	-0.4
2,828,597	+		PP_2480	0.64	+0.8
2,828,597	+		PP_2480	0.64	-0.8
2,828,685	-		PP_2480	0.71	+1.3
2,828,713	+		PP_2480	0.73	+1.9
2,828,713	+		PP_2480	0.73	-1.4
2,828,713	+		PP_2480	0.73	+1.1
2,828,713	+		PP_2480	0.73	+1.8
2,828,713	+		PP_2480	0.73	-4.7
2,828,714	-		PP_2480	0.74	+1.0
2,829,040	-				-1.0
2,829,075	+				-2.3
2,829,076	-				+0.3
2,829,084	+				+1.0
2,829,085	-				+0.7
2,829,090	+				+0.7
2,829,182	+		PP_2481	0.35	-0.0
2,829,182	+		PP_2481	0.35	+0.6
2,829,182	+		PP_2481	0.35	+1.2
2,829,183	-		PP_2481	0.36	+1.0
2,829,183	-		PP_2481	0.36	-1.2
2,829,183	-		PP_2481	0.36	+0.2
2,829,183	-		PP_2481	0.36	+2.2
2,829,183	-		PP_2481	0.36	-0.6
2,829,199	+		PP_2481	0.40	+0.4
2,829,199	+		PP_2481	0.40	+1.0
2,829,200	-		PP_2481	0.41	+0.3
2,829,200	-		PP_2481	0.41	-0.8
2,829,281	+		PP_2481	0.65	-0.6
2,829,281	+		PP_2481	0.65	-1.5
2,829,281	+		PP_2481	0.65	-1.4
2,829,281	+		PP_2481	0.65	-0.6
2,829,282	-		PP_2481	0.65	+1.4
2,829,282	-		PP_2481	0.65	+0.6
2,829,332	+		PP_2481	0.80	+0.3
2,829,333	-		PP_2481	0.80	+0.6
2,829,401	+				+0.1
2,829,475	+				+1.8
2,829,476	-				-0.9
2,829,476	-				-3.8
2,829,476	-				-4.0
2,829,644	+		PP_2482	0.25	-2.1
2,829,644	+		PP_2482	0.25	+0.8
2,829,644	+		PP_2482	0.25	+0.1
2,829,644	+		PP_2482	0.25	+1.4
2,829,645	-		PP_2482	0.26	+1.9
2,829,645	-		PP_2482	0.26	-2.4
2,829,645	-		PP_2482	0.26	-0.2
2,829,645	-		PP_2482	0.26	+0.0
2,829,649	-		PP_2482	0.26	+1.0
2,829,649	-		PP_2482	0.26	-3.9
2,829,669	+		PP_2482	0.28	+2.2
2,829,882	+		PP_2482	0.50	-0.5
2,829,882	+		PP_2482	0.50	+1.9
2,829,935	-		PP_2482	0.56	+1.5
2,829,958	-		PP_2482	0.58	-0.5
2,829,958	-		PP_2482	0.58	-0.2
2,829,999	+		PP_2482	0.62	-0.3