Strain Fitness in Pseudomonas putida KT2440 around PP_2316

Experiment: 3-methyl-1-butanol 0.25 vol% (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-1-butanol 0.25 vol% (C)
2,643,819	-				-0.2
2,643,826	+				+0.0
2,643,827	-				+0.2
2,643,957	+				-0.5
2,643,958	-				-3.8
2,643,958	-				+0.4
2,643,958	-				+0.5
2,643,958	-				+0.1
2,643,958	-				-0.8
2,643,958	-				+0.0
2,643,958	-				-1.9
2,644,239	+				+0.7
2,644,240	-				+0.8
2,644,274	+				-2.7
2,644,274	+				-0.1
2,644,275	-				+0.2
2,644,275	-				-0.9
2,644,335	+		PP_2315	0.15	+1.5
2,644,335	+		PP_2315	0.15	-4.3
2,644,336	-		PP_2315	0.15	-0.9
2,644,336	-		PP_2315	0.15	-2.5
2,644,404	+		PP_2315	0.29	+0.6
2,644,405	-		PP_2315	0.29	-0.1
2,644,410	+		PP_2315	0.30	+0.8
2,644,410	+		PP_2315	0.30	-0.5
2,644,410	+		PP_2315	0.30	+0.3
2,644,411	-		PP_2315	0.30	+1.1
2,644,411	-		PP_2315	0.30	+0.8
2,644,411	-		PP_2315	0.30	+1.1
2,644,411	-		PP_2315	0.30	+0.4
2,644,453	-		PP_2315	0.39	+0.6
2,644,453	-		PP_2315	0.39	+0.0
2,644,611	+		PP_2315	0.71	+0.2
2,644,612	-		PP_2315	0.71	-0.4
2,644,612	-				+0.8
2,644,612	-		PP_2315	0.71	-1.5
2,644,682	+		PP_2315	0.86	+0.9
2,644,682	+		PP_2315	0.86	+0.4
2,644,682	+		PP_2315	0.86	-2.0
2,644,682	+		PP_2315	0.86	-0.5
2,644,682	+		PP_2315	0.86	-2.8
2,644,682	+		PP_2315	0.86	-2.0
2,644,682	+		PP_2315	0.86	+0.8
2,644,682	+		PP_2315	0.86	-1.3
2,644,682	+		PP_2315	0.86	-0.3
2,644,683	-		PP_2315	0.86	+2.2
2,644,683	-		PP_2315	0.86	-2.9
2,644,683	-		PP_2315	0.86	-0.6
2,644,683	-		PP_2315	0.86	+2.0
2,644,683	-		PP_2315	0.86	+1.5
2,644,683	-		PP_2315	0.86	+1.7
2,644,683	-		PP_2315	0.86	+1.5
2,644,683	-		PP_2315	0.86	+1.6
2,644,683	-				+1.8
2,644,689	-		PP_2315	0.87	-0.0
2,644,708	-				+1.3
2,644,708	-				-0.2
2,644,708	-				-2.2
2,644,708	-				+1.0
2,644,708	-				-1.0
2,644,977	-				+1.6
2,644,977	-				-3.3
2,645,179	+		PP_2316	0.15	-1.2
2,645,179	+		PP_2316	0.15	+0.2
2,645,179	+		PP_2316	0.15	+1.6
2,645,180	-		PP_2316	0.15	+0.4
2,645,180	-		PP_2316	0.15	+0.1
2,645,180	-		PP_2316	0.15	+1.5
2,645,197	-		PP_2316	0.15	-1.3
2,645,326	+		PP_2316	0.20	+0.6
2,645,326	+		PP_2316	0.20	+2.7
2,645,326	+		PP_2316	0.20	-3.2
2,645,327	-		PP_2316	0.20	+0.2
2,645,371	+				+2.3
2,645,371	+		PP_2316	0.22	+0.5
2,645,523	-		PP_2316	0.28	-3.1
2,645,877	+		PP_2316	0.42	+1.6
2,645,878	-		PP_2316	0.43	+0.4
2,645,928	+		PP_2316	0.45	+0.1
2,645,928	+		PP_2316	0.45	-3.5
2,646,249	-		PP_2316	0.57	+1.7
2,646,398	-		PP_2316	0.63	+1.2
2,646,398	-		PP_2316	0.63	+2.2
2,646,472	+		PP_2316	0.66	+0.4
2,646,498	+		PP_2316	0.67	-0.1
2,646,513	+		PP_2316	0.68	-0.9
2,646,514	-		PP_2316	0.68	+0.8
2,646,542	-		PP_2316	0.69	-0.9
2,646,643	+		PP_2316	0.73	-2.2
2,646,643	+		PP_2316	0.73	+0.0
2,646,643	+		PP_2316	0.73	+0.0
2,646,685	+		PP_2316	0.75	-2.5
2,646,685	+		PP_2316	0.75	-0.0
2,646,686	-		PP_2316	0.75	+1.7
2,646,686	-		PP_2316	0.75	+2.5
2,646,686	-		PP_2316	0.75	+1.7
2,646,766	+		PP_2316	0.78	-0.9
2,646,767	-		PP_2316	0.78	+1.4
2,646,793	+		PP_2316	0.79	+0.5
2,646,794	-		PP_2316	0.79	-0.3
2,646,794	-		PP_2316	0.79	+1.5
2,646,794	-		PP_2316	0.79	+0.7
2,646,794	-		PP_2316	0.79	+2.1
2,646,797	+		PP_2316	0.79	-0.5
2,646,798	-		PP_2316	0.79	+1.4
2,646,798	-		PP_2316	0.79	-1.1
2,646,934	+		PP_2316	0.85	+2.8
2,646,934	+		PP_2316	0.85	-1.1
2,646,934	+		PP_2316	0.85	+1.2
2,646,935	-		PP_2316	0.85	+1.4
2,646,935	-		PP_2316	0.85	+0.4
2,646,935	-		PP_2316	0.85	+0.8
2,646,935	-		PP_2316	0.85	+0.9
2,646,954	+		PP_2316	0.86	-0.8
2,646,955	-				-0.3
2,646,994	-		PP_2316	0.87	+1.3
2,647,174	-				+0.5
2,647,213	-				-1.9
2,647,313	+				-0.8
2,647,939	+				+1.4
2,647,939	+				+0.4
2,647,939	+				+1.8
2,647,940	-				+0.6
2,647,940	-				+0.7
2,647,940	-				+0.4
2,647,973	-				-0.6
2,648,052	+				+0.2
2,648,053	-				+1.8
2,648,102	+		PP_2318	0.14	-1.7
2,648,106	-		PP_2318	0.15	-0.1
2,648,106	-		PP_2318	0.15	-2.8
2,648,106	-		PP_2318	0.15	+0.7
2,648,106	-				+1.1
2,648,268	-		PP_2318	0.42	-3.2