Strain Fitness in Pseudomonas putida KT2440 around PP_2102

Experiment: 3-methyl-1-butanol 0.25 vol% (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-1-butanol 0.25 vol% (C)
2,399,561	+				+1.0
2,399,561	+				-0.5
2,399,567	-				+0.8
2,399,741	+		PP_2101	0.13	+0.7
2,399,741	+		PP_2101	0.13	+0.3
2,399,742	-		PP_2101	0.13	+0.2
2,399,909	+		PP_2101	0.40	-1.8
2,399,927	-		PP_2101	0.43	-1.7
2,399,927	-		PP_2101	0.43	+1.0
2,399,978	+		PP_2101	0.51	-1.1
2,400,008	+				+0.0
2,400,100	+		PP_2101	0.71	+0.7
2,400,201	-		PP_2101	0.87	+0.4
2,400,201	-		PP_2101	0.87	+2.0
2,400,261	+				+0.3
2,400,261	+				-1.6
2,400,265	+				+1.2
2,400,265	+				+0.4
2,400,265	+				+1.3
2,400,266	-				+1.7
2,400,266	-				+1.9
2,400,366	+				+2.1
2,400,366	+				+1.5
2,400,366	+				+2.2
2,400,366	+				+1.5
2,400,368	+				-0.2
2,400,389	+				-0.4
2,400,421	+				-3.3
2,400,421	+				-1.2
2,400,458	-				-1.1
2,400,478	-				-0.8
2,400,606	+				+0.8
2,400,606	+				+0.8
2,400,606	+				-0.6
2,400,606	+				+0.8
2,400,606	+				-0.2
2,400,606	+				-0.6
2,400,606	+				-0.1
2,400,607	-				-0.3
2,400,607	-				-2.6
2,400,607	-				-0.5
2,400,607	-				+0.3
2,400,607	-				-0.1
2,400,607	-				-0.0
2,400,730	+		PP_2102	0.13	-0.3
2,400,731	-		PP_2102	0.13	+0.0
2,400,731	-		PP_2102	0.13	-1.7
2,400,731	-		PP_2102	0.13	-2.7
2,400,795	+		PP_2102	0.18	+0.7
2,400,795	+		PP_2102	0.18	-2.3
2,400,796	-		PP_2102	0.18	-1.2
2,400,813	-		PP_2102	0.19	-3.2
2,401,051	-		PP_2102	0.37	-0.2
2,401,108	-		PP_2102	0.41	+0.4
2,401,108	-		PP_2102	0.41	+0.6
2,401,108	-		PP_2102	0.41	-1.9
2,401,155	+		PP_2102	0.45	+1.0
2,401,156	-		PP_2102	0.45	+0.5
2,401,279	-		PP_2102	0.54	-2.9
2,401,347	+				+0.2
2,401,365	+		PP_2102	0.61	+0.8
2,401,365	+		PP_2102	0.61	-1.0
2,401,366	-		PP_2102	0.61	-1.7
2,401,366	-		PP_2102	0.61	-1.1
2,401,366	-		PP_2102	0.61	+0.3
2,401,398	+		PP_2102	0.63	-1.4
2,401,399	-		PP_2102	0.63	-0.4
2,401,399	-		PP_2102	0.63	-2.8
2,401,712	-		PP_2102	0.87	-3.2
2,401,712	-		PP_2102	0.87	+1.1
2,401,717	+		PP_2102	0.87	+0.6
2,401,839	+				-0.9
2,401,840	-				-0.0
2,401,923	-				+1.5
2,401,979	+				-2.5
2,401,980	-				+1.5
2,402,070	+		PP_2103	0.10	+0.3
2,402,100	+		PP_2103	0.19	+1.3
2,402,100	+		PP_2103	0.19	+2.1
2,402,128	-		PP_2103	0.28	-2.8
2,402,211	+		PP_2103	0.53	+0.9
2,402,211	+		PP_2103	0.53	+0.3
2,402,463	+		PP_2104	0.27	+0.2
2,402,464	-		PP_2104	0.27	-1.0
2,402,481	+		PP_2104	0.31	-0.3
2,402,481	+		PP_2104	0.31	+0.5
2,402,481	+		PP_2104	0.31	+0.1
2,402,481	+		PP_2104	0.31	-1.7
2,402,481	+		PP_2104	0.31	-3.5
2,402,482	-		PP_2104	0.32	+1.1
2,402,482	-		PP_2104	0.32	+2.0
2,402,482	-		PP_2104	0.32	+0.1
2,402,503	+		PP_2104	0.37	+0.9
2,402,504	-		PP_2104	0.38	+1.2
2,402,829	+		PP_2105	0.26	+0.1
2,402,829	+		PP_2105	0.26	-0.4
2,402,830	-		PP_2105	0.26	-1.1