Strain Fitness in Pseudomonas putida KT2440 around PP_1714

Experiment: 3-methyl-1-butanol 0.25 vol% (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-1-butanol 0.25 vol% (C)
1,914,135	+		PP_1713	0.54	+1.0
1,914,135	+		PP_1713	0.54	-2.2
1,914,346	-				+1.8
1,914,554	+				-1.2
1,914,554	+				+1.6
1,914,554	+				-3.7
1,914,555	-				-1.4
1,914,558	+				+0.9
1,914,559	-				+0.2
1,914,620	-				-1.1
1,914,663	-				-0.4
1,914,663	-				+0.7
1,914,701	+				-3.6
1,914,702	-				-0.0
1,914,702	-				-2.1
1,914,734	+				-0.2
1,914,766	+				+0.4
1,914,767	-				+1.3
1,914,767	-				-1.0
1,914,767	-				+0.1
1,914,767	-				-1.5
1,914,816	+				+0.0
1,914,816	+				-3.6
1,914,817	-				-1.3
1,914,817	-				-1.9
1,914,857	+				-0.5
1,914,931	+		PP_1714	0.15	-3.3
1,914,931	+		PP_1714	0.15	-0.8
1,914,932	-		PP_1714	0.15	-0.3
1,915,026	+		PP_1714	0.27	-3.6
1,915,064	+		PP_1714	0.32	-0.7
1,915,204	+		PP_1714	0.51	-2.8
1,915,205	-		PP_1714	0.51	-1.2
1,915,268	-		PP_1714	0.59	-1.4
1,915,399	+		PP_1714	0.77	-0.3
1,915,399	+		PP_1714	0.77	-0.0
1,915,429	+		PP_1714	0.81	-2.0
1,915,570	+				+0.4
1,915,570	+				-0.6
1,915,570	+				+0.2
1,915,571	-				+1.2
1,915,571	-				+0.9
1,915,682	+				-2.0
1,915,682	+				-0.9
1,915,683	-				-0.7
1,915,719	-				-1.4
1,915,719	-				-0.0
1,915,827	+				-0.7
1,915,828	-				+2.1
1,915,828	-				-3.6
1,916,168	+		PP_1715	0.70	-2.8
1,916,346	+				+1.7
1,916,347	-				-0.1
1,916,352	-				-1.4
1,916,411	+				+0.7
1,916,418	+				+0.0
1,916,418	+				+1.3
1,916,476	+		PP_1716	0.19	+0.0
1,916,476	+		PP_1716	0.19	-2.9
1,916,477	-		PP_1716	0.19	+0.8