Strain Fitness in Pseudomonas putida KT2440 around PP_1439

Experiment: 3-methyl-1-butanol 0.25 vol% (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-1-butanol 0.25 vol% (C)
1,638,754	+				-1.0
1,638,759	-				+0.6
1,638,777	+				+0.9
1,638,777	+				+0.8
1,639,122	-		PP_1438	0.57	-3.8
1,639,122	-		PP_1438	0.57	+1.0
1,639,122	-		PP_1438	0.57	+0.9
1,639,122	-		PP_1438	0.57	-3.5
1,639,122	-		PP_1438	0.57	-0.4
1,639,277	+		PP_1438	0.80	-0.1
1,639,277	+		PP_1438	0.80	-0.4
1,639,278	-		PP_1438	0.80	-1.0
1,639,278	-		PP_1438	0.80	+0.8
1,639,278	-		PP_1438	0.80	-1.1
1,639,337	+		PP_1438	0.89	+1.2
1,639,338	-		PP_1438	0.89	+0.7
1,639,367	+				-1.6
1,639,368	-				+0.5
1,639,403	-				+1.8
1,639,422	+				+2.0
1,639,423	-				+1.3
1,639,453	-				+1.5
1,639,453	-				+0.7
1,639,523	+				-2.8
1,639,568	-				+1.4
1,639,581	+				-2.2
1,639,582	-				-1.1
1,639,582	-				+2.1
1,639,582	-				-0.9
1,639,643	+				-0.3
1,639,706	+				+0.1
1,639,706	+				+2.3
1,639,706	+				-0.7
1,639,706	+				+1.3
1,639,737	-				-1.3
1,639,737	-				+0.6
1,639,737	-				+0.2
1,639,778	+		PP_1439	0.28	-2.4
1,639,779	-		PP_1439	0.28	-1.5
1,639,966	+				+0.3
1,639,967	-				-1.5
1,639,967	-				-2.5
1,639,967	-				-1.8
1,639,967	-				+1.5
1,639,967	-				-1.3
1,640,211	+		PP_1440	0.23	-4.3
1,640,212	-		PP_1440	0.23	+1.1
1,640,365	-		PP_1440	0.39	+0.3
1,640,365	-		PP_1440	0.39	+1.3
1,640,365	-		PP_1440	0.39	+0.1
1,640,365	-		PP_1440	0.39	-3.3
1,640,365	-		PP_1440	0.39	-3.8
1,640,463	+		PP_1440	0.49	-2.3
1,640,464	-		PP_1440	0.49	-0.7
1,640,464	-		PP_1440	0.49	-1.1
1,640,557	-		PP_1440	0.59	-2.4
1,640,557	-		PP_1440	0.59	-0.3
1,640,557	-		PP_1440	0.59	-2.1
1,640,560	-		PP_1440	0.59	+0.7