Strain Fitness in Pseudomonas putida KT2440 around PP_1246

Experiment: 3-methyl-1-butanol 0.25 vol% (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-1-butanol 0.25 vol% (C)
1,420,557	-				-1.1
1,420,598	+				+1.5
1,420,599	-				-0.2
1,420,744	-		PP_1245	0.25	+0.5
1,420,912	-		PP_1245	0.44	+2.5
1,420,912	-		PP_1245	0.44	-1.9
1,420,992	+		PP_1245	0.53	-0.1
1,420,992	+		PP_1245	0.53	+1.2
1,420,993	-		PP_1245	0.53	-0.3
1,420,993	-		PP_1245	0.53	-0.1
1,420,993	-		PP_1245	0.53	-0.0
1,421,142	+		PP_1245	0.70	-1.2
1,421,142	+		PP_1245	0.70	-3.7
1,421,143	-		PP_1245	0.70	+1.9
1,421,143	-		PP_1245	0.70	-0.1
1,421,143	-		PP_1245	0.70	-2.4
1,421,157	+		PP_1245	0.71	+1.8
1,421,158	-		PP_1245	0.71	-2.8
1,421,158	-		PP_1245	0.71	+0.8
1,422,110	-		PP_1246	0.37	-1.7
1,422,110	-		PP_1246	0.37	+1.2
1,422,110	-		PP_1246	0.37	+0.8
1,422,230	+		PP_1246	0.44	+0.5
1,422,230	+		PP_1246	0.44	-1.7
1,422,257	+		PP_1246	0.45	+0.3
1,422,331	+		PP_1246	0.49	+0.4
1,422,396	-		PP_1246	0.52	+1.7
1,422,420	-		PP_1246	0.54	+0.4
1,422,420	-		PP_1246	0.54	-0.3
1,422,453	-		PP_1246	0.56	-1.0
1,422,455	+		PP_1246	0.56	+1.4
1,422,503	+		PP_1246	0.58	+2.6
1,422,504	-		PP_1246	0.58	+0.4
1,422,504	-		PP_1246	0.58	+0.6
1,422,711	+		PP_1246	0.69	+0.8
1,422,924	+		PP_1246	0.81	+1.4
1,422,924	+				-2.3
1,422,925	-		PP_1246	0.81	-2.7
1,422,968	+		PP_1246	0.83	+0.7
1,422,969	-		PP_1246	0.83	-1.0
1,422,969	-		PP_1246	0.83	+1.6
1,422,969	-		PP_1246	0.83	-0.5
1,422,969	-		PP_1246	0.83	+2.5
1,422,969	-		PP_1246	0.83	+1.2
1,423,016	+		PP_1246	0.86	+0.5
1,423,032	-		PP_1246	0.87	+1.9
1,423,062	-		PP_1246	0.88	-0.8
1,423,062	-		PP_1246	0.88	+1.0
1,423,065	-		PP_1246	0.88	+2.3
1,423,093	+		PP_1246	0.90	+1.7
1,423,093	+		PP_1246	0.90	+1.6
1,423,098	-				+0.8
1,423,238	+				+0.2
1,423,238	+				-1.2
1,423,238	+				+0.3
1,423,238	+				+1.1
1,423,239	-				-0.3
1,423,239	-				-2.8
1,423,365	+				-1.1
1,423,407	+				+3.0
1,423,410	+				+1.7
1,423,411	-		PP_5467	0.10	+3.3
1,423,411	-		PP_5467	0.10	+1.8
1,423,431	+		PP_5467	0.12	+0.4
1,423,432	-		PP_5467	0.12	+1.9
1,423,432	-		PP_5467	0.12	+2.7
1,423,470	+		PP_5467	0.15	-1.6
1,423,586	-		PP_5467	0.24	+1.6
1,423,629	+		PP_5467	0.28	-1.3
1,423,665	+		PP_5467	0.31	+1.7
1,423,665	+		PP_5467	0.31	+0.0
1,423,727	+		PP_5467	0.36	-1.3
1,423,728	-		PP_5467	0.36	+0.8
1,423,761	+		PP_5467	0.39	-0.5
1,423,761	+		PP_5467	0.39	-1.0
1,423,761	+		PP_5467	0.39	+0.6
1,423,762	-		PP_5467	0.39	-3.0
1,423,762	-		PP_5467	0.39	+1.1
1,424,140	-		PP_5467	0.70	+0.2
1,424,148	+		PP_5467	0.71	+1.7
1,424,215	-		PP_5467	0.77	+2.4
1,424,226	+		PP_5467	0.77	+0.3
1,424,226	+		PP_5467	0.77	+1.1
1,424,227	-				-1.3