Strain Fitness in Pseudomonas putida KT2440 around PP_1217

Experiment: 3-methyl-1-butanol 0.25 vol% (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-1-butanol 0.25 vol% (C)
1,393,538	+				-4.4
1,393,558	-				-0.2
1,393,577	+				-3.4
1,393,577	+				+0.9
1,393,577	+				+1.6
1,393,577	+				-2.8
1,393,578	-				-2.4
1,393,602	+				+2.3
1,393,602	+				+0.3
1,393,703	+				-1.9
1,393,704	-				-3.4
1,393,756	-		PP_1216	0.17	+0.5
1,393,794	-		PP_1216	0.23	+1.8
1,394,099	-		PP_1216	0.73	-2.5
1,394,160	+		PP_1216	0.83	-2.9
1,394,160	+		PP_1216	0.83	-2.8
1,394,161	-		PP_1216	0.83	-2.3
1,394,354	+				-0.1
1,394,354	+				-1.6
1,394,355	-				-1.5
1,394,355	-				-2.3
1,394,355	-				-2.4
1,394,705	-		PP_1217	0.42	-2.6
1,394,744	-		PP_1217	0.46	-1.5
1,394,747	-		PP_1217	0.46	-2.3
1,394,814	-		PP_1217	0.53	-2.1
1,394,891	+		PP_1217	0.60	+0.3
1,394,961	-		PP_1217	0.67	-1.8
1,395,148	+		PP_1217	0.84	-1.8
1,395,148	+		PP_1217	0.84	-0.1
1,395,149	-		PP_1217	0.85	-0.8
1,395,149	-		PP_1217	0.85	+1.5
1,395,149	-		PP_1217	0.85	-1.6
1,395,149	-		PP_1217	0.85	-0.5
1,395,149	-		PP_1217	0.85	-1.8
1,395,173	+		PP_1217	0.87	-2.5
1,395,191	+		PP_1217	0.89	-2.1
1,395,191	+		PP_1217	0.89	+0.5
1,395,191	+		PP_1217	0.89	-1.8
1,395,192	-		PP_1217	0.89	-1.1
1,395,192	-		PP_1217	0.89	-1.1
1,395,192	-		PP_1217	0.89	-1.1
1,395,192	-		PP_1217	0.89	+1.5
1,395,236	+				-0.8
1,395,236	+				-0.5
1,395,237	-				-1.8
1,395,237	-				-0.1
1,395,237	-				+0.6
1,395,256	+				+1.0
1,395,256	+				+2.1
1,395,257	-				-1.7
1,395,257	-				-2.9
1,395,257	-				-3.4
1,395,377	+				-2.9
1,395,377	+				-0.7
1,395,423	+				-0.7
1,395,423	+				+0.9
1,395,430	+				+0.9
1,395,430	+				+2.2
1,395,495	+		PP_1218	0.13	+1.2
1,395,517	+		PP_1218	0.18	-2.3
1,395,517	+		PP_1218	0.18	-0.6
1,395,520	+		PP_1218	0.19	+2.8
1,395,520	+		PP_1218	0.19	-0.5
1,395,725	+		PP_1218	0.64	-0.6
1,395,821	+		PP_1218	0.85	-1.9