Strain Fitness in Pseudomonas putida KT2440 around PP_1124

Experiment: 3-methyl-1-butanol 0.25 vol% (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-1-butanol 0.25 vol% (C)
1,285,068	-		PP_1122	0.37	-0.5
1,285,388	+		PP_1122	0.78	+2.4
1,285,649	+				+1.0
1,285,649	+				+0.9
1,285,649	+				-0.0
1,285,649	+				+0.8
1,285,649	+				-0.7
1,285,649	+				-1.0
1,285,649	+				-0.1
1,285,649	+				-0.9
1,285,649	+				+1.3
1,285,649	+				+0.4
1,285,649	+				-1.9
1,285,650	-				-3.0
1,285,650	-				-4.3
1,285,650	-				+1.1
1,285,650	-				+0.8
1,285,650	-				-0.2
1,285,650	-				+0.4
1,285,650	-				-2.0
1,285,650	-				+1.8
1,285,650	-				-0.5
1,285,650	-				+2.2
1,285,662	+				+0.8
1,286,266	+		PP_1124	0.45	+0.1
1,286,267	-		PP_1124	0.46	-1.5
1,286,267	-		PP_1124	0.46	-4.2
1,286,322	+		PP_1124	0.57	-2.4
1,286,322	+		PP_1124	0.57	-2.3
1,286,469	+		PP_1124	0.89	-2.8
1,286,497	+				-0.8
1,286,497	+				+1.9
1,286,557	-				-1.9
1,286,557	-				-0.1
1,286,561	+				-0.8
1,286,561	+				-0.2
1,286,589	-				-0.6
1,286,657	+				+0.5
1,286,696	+				+0.9
1,286,831	+				+0.2
1,286,831	+				+0.0
1,286,831	+				-1.6
1,286,831	+				-3.7
1,286,832	-				+1.3
1,286,832	-				+0.9
1,286,832	-				-0.2
1,286,997	-		PP_1125	0.18	-1.6
1,286,997	-		PP_1125	0.18	-1.3
1,287,272	+		PP_1125	0.30	-3.4
1,287,272	+		PP_1125	0.30	+1.1
1,287,273	-		PP_1125	0.31	+1.6
1,287,273	-		PP_1125	0.31	-3.3
1,287,273	-		PP_1125	0.31	+0.8
1,287,389	+		PP_1125	0.36	+0.5
1,287,389	+		PP_1125	0.36	+0.4
1,287,389	+		PP_1125	0.36	-2.7
1,287,389	+		PP_1125	0.36	-1.1
1,287,389	+		PP_1125	0.36	+0.5
1,287,390	-		PP_1125	0.36	-1.7
1,287,390	-		PP_1125	0.36	+2.9
1,287,390	-		PP_1125	0.36	-0.6
1,287,390	-		PP_1125	0.36	-3.5