Strain Fitness in Pseudomonas putida KT2440 around PP_1069

Experiment: 3-methyl-1-butanol 0.25 vol% (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-1-butanol 0.25 vol% (C)
1,223,085	+				-1.8
1,223,085	+				+0.6
1,223,133	-				+0.9
1,223,221	+				-0.9
1,223,222	-				+1.2
1,223,435	-		PP_1068	0.21	-2.0
1,223,520	+		PP_1068	0.32	+0.2
1,223,521	-		PP_1068	0.32	-0.5
1,223,521	-		PP_1068	0.32	+0.3
1,223,639	-		PP_1068	0.47	+0.0
1,224,070	+				-0.4
1,224,166	+		PP_1069	0.24	-0.0
1,224,166	+		PP_1069	0.24	-0.2
1,224,167	-		PP_1069	0.24	-1.3
1,224,167	-		PP_1069	0.24	-1.3
1,224,168	+		PP_1069	0.24	+1.6
1,224,271	+		PP_1069	0.39	-2.3
1,224,272	-		PP_1069	0.40	-0.9
1,224,410	+		PP_1069	0.60	-0.4
1,224,454	+		PP_1069	0.67	-0.3
1,224,454	+		PP_1069	0.67	+0.5
1,224,455	-				-0.4
1,224,497	-		PP_1069	0.73	-0.7
1,224,497	-		PP_1069	0.73	+0.8
1,224,680	-				-1.0
1,224,769	+		PP_1070	0.12	-2.2
1,224,770	-		PP_1070	0.12	+0.9
1,224,770	-		PP_1070	0.12	+0.5
1,224,770	-		PP_1070	0.12	-1.8
1,224,770	-		PP_1070	0.12	-0.5
1,224,958	+		PP_1070	0.37	-1.4
1,224,958	+		PP_1070	0.37	-0.0
1,224,959	-		PP_1070	0.38	+0.4
1,224,959	-		PP_1070	0.38	-2.3
1,224,959	-		PP_1070	0.38	-2.7
1,225,172	-		PP_1070	0.66	-0.0
1,225,223	-		PP_1070	0.73	+0.2
1,225,351	+				-1.0
1,225,352	-				-0.4
1,225,363	+				-4.3
1,225,418	-				-1.5
1,225,418	-				-1.9
1,225,502	+				-2.0
1,225,503	-				-2.2
1,225,503	-				-0.4
1,225,509	+				-0.2
1,225,557	+				+0.3
1,225,557	+				+0.2
1,225,561	+				-0.3
1,225,561	+				-1.0
1,225,562	-				-2.4