Strain Fitness in Pseudomonas putida KT2440 around PP_1059

Experiment: 3-methyl-1-butanol 0.25 vol% (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-1-butanol 0.25 vol% (C)
1,208,412	+		PP_1058	0.81	+0.3
1,208,413	-		PP_1058	0.81	-2.2
1,208,413	-		PP_1058	0.81	+1.2
1,208,413	-				+0.6
1,208,413	-		PP_1058	0.81	+0.9
1,208,517	-		PP_1058	0.85	+2.4
1,208,517	-		PP_1058	0.85	-1.7
1,208,522	+		PP_1058	0.85	+0.7
1,208,528	+		PP_1058	0.85	+0.6
1,208,585	+		PP_1058	0.87	-3.8
1,208,586	-		PP_1058	0.87	+0.4
1,208,612	+		PP_1058	0.88	+0.6
1,208,613	-		PP_1058	0.88	-3.3
1,208,613	-		PP_1058	0.88	-3.1
1,208,613	-		PP_1058	0.88	-0.5
1,208,657	+		PP_1058	0.89	-3.4
1,208,658	-		PP_1058	0.89	-2.3
1,208,700	+				-0.6
1,208,702	+				+0.6
1,208,703	-				-2.4
1,208,703	-				+0.1
1,208,739	-				-3.2
1,208,739	-				-1.7
1,208,774	+				-0.2
1,208,775	-				+1.0
1,208,784	+				+0.3
1,208,827	-				-0.0
1,208,827	-				-0.1
1,208,841	-				+0.9
1,208,841	-				+0.9
1,208,902	+				-1.4
1,208,903	-				-0.0
1,208,903	-				-0.5
1,208,950	+				+1.5
1,208,951	-				+0.3
1,208,951	-				+0.6
1,209,000	+				-0.5
1,209,000	+				+0.9
1,209,008	+				+1.1
1,209,021	-				+3.7
1,209,047	-				-0.7
1,209,061	+				-0.5
1,209,062	-				-0.6
1,209,062	-				+0.1
1,209,062	-				+1.2
1,209,078	-				+2.7
1,209,078	-				-2.1
1,209,146	+				+0.5
1,209,146	+				-1.7
1,209,146	+				+1.9
1,209,146	+				-3.2
1,209,146	+				-1.4
1,209,147	-				+1.8
1,209,147	-				+0.8
1,209,147	-				+1.4
1,209,192	+				+1.7
1,209,208	+				-0.1
1,209,209	-				-0.9
1,209,209	-				+0.3
1,209,210	+				+0.7
1,209,210	+				-1.3
1,209,210	+				+0.7
1,209,211	-				+0.0
1,209,211	-				-0.4
1,209,211	-				+2.4
1,209,211	-				+0.7
1,209,211	-				-2.8
1,209,212	+				-2.6
1,209,213	-				-3.1
1,209,241	+				+1.3
1,209,241	+				-1.2
1,209,241	+				-0.2
1,209,241	+				-1.0
1,209,241	+				+0.2
1,209,241	+				-2.7
1,209,241	+				+0.4
1,209,241	+				+1.2
1,209,241	+				+0.4
1,209,241	+				-1.9
1,209,241	+				+0.7
1,209,242	-				+1.3
1,209,242	-				+0.1
1,209,242	-				+0.6
1,209,242	-				+0.1
1,209,242	-				+0.8
1,209,242	-				-1.2
1,209,242	-				+0.8
1,209,242	-				-0.0
1,209,243	+				+0.5
1,209,243	+				+0.1
1,209,277	-				-0.0
1,209,277	-				+0.3
1,209,385	+				-2.6
1,209,385	+				-0.8
1,209,385	+				-0.7
1,209,385	+				+1.5
1,209,385	+				+1.4
1,209,385	+				-0.1
1,209,385	+				-2.1
1,209,385	+				+1.6
1,209,386	-				+1.0
1,209,386	-				-1.5
1,209,386	-				-3.2
1,209,386	-				+0.2
1,209,386	-				+0.5
1,209,386	-				-0.3
1,209,386	-				-0.1
1,209,386	-				-2.3
1,209,386	-				+0.5
1,209,392	-				-0.7
1,209,392	-				+0.5
1,209,496	+				+0.6
1,209,566	+		PP_1059	0.12	-1.2
1,209,567	-		PP_1059	0.12	-0.2
1,209,567	-		PP_1059	0.12	+0.2
1,209,567	-		PP_1059	0.12	+1.1
1,209,761	+		PP_1059	0.26	-0.4
1,209,761	+		PP_1059	0.26	+1.0
1,209,761	+		PP_1059	0.26	+0.3
1,209,762	-		PP_1059	0.26	-3.1
1,209,762	-		PP_1059	0.26	+0.1
1,209,762	-		PP_1059	0.26	+1.2
1,210,058	+		PP_1059	0.47	+0.2
1,210,163	+		PP_1059	0.54	+1.1
1,210,197	-		PP_1059	0.57	+0.5
1,210,352	+		PP_1059	0.68	+0.7
1,210,352	+		PP_1059	0.68	+0.7
1,210,352	+		PP_1059	0.68	+0.6
1,210,352	+		PP_1059	0.68	-0.2
1,210,353	-		PP_1059	0.68	+1.7
1,210,353	-		PP_1059	0.68	-1.0
1,210,353	-		PP_1059	0.68	+0.7
1,210,354	+		PP_1059	0.68	+0.6
1,210,355	-		PP_1059	0.68	-0.4
1,210,472	+		PP_1059	0.76	+0.5
1,210,472	+		PP_1059	0.76	+1.2
1,210,472	+		PP_1059	0.76	+0.9
1,210,472	+		PP_1059	0.76	+1.8
1,210,473	-		PP_1059	0.76	-0.7
1,210,473	-		PP_1059	0.76	+2.2
1,210,611	-		PP_1059	0.86	+0.6
1,210,615	+		PP_1059	0.86	+0.7
1,210,615	+		PP_1059	0.86	+2.7
1,210,616	-		PP_1059	0.86	-1.9
1,210,616	-		PP_1059	0.86	+0.9
1,210,616	-		PP_1059	0.86	+1.2
1,210,616	-		PP_1059	0.86	+2.7
1,210,640	+		PP_1059	0.88	+0.0
1,210,640	+		PP_1059	0.88	-0.2
1,210,686	-				+0.1
1,210,696	+				+1.7
1,210,712	+				-0.7
1,210,712	+				+0.8
1,210,713	-				+0.5
1,210,713	-				+0.6
1,210,751	+				-0.3
1,210,752	-				-0.1
1,210,752	-				+3.1
1,210,752	-				+0.0
1,210,752	-				+1.0
1,210,752	-				-2.1
1,210,754	+				+0.4
1,210,754	+				-2.4
1,210,755	-				+1.8
1,210,799	-				+0.1
1,210,911	+				+0.1
1,210,911	+				-3.8
1,210,912	-				-0.2
1,210,989	+				-0.5
1,211,699	+		PP_1060	0.53	+1.1
1,211,699	+		PP_1060	0.53	-0.6