Strain Fitness in Pseudomonas putida KT2440 around PP_0927

Experiment: 3-methyl-1-butanol 0.25 vol% (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-1-butanol 0.25 vol% (C)
1,067,945	-		PP_0926	0.12	-0.8
1,068,009	+		PP_0926	0.18	-0.3
1,068,009	+		PP_0926	0.18	-0.6
1,068,054	+		PP_0926	0.23	-3.5
1,068,055	-		PP_0926	0.23	-1.2
1,068,138	+		PP_0926	0.32	-4.8
1,068,138	+		PP_0926	0.32	+2.0
1,068,138	+		PP_0926	0.32	-0.2
1,068,138	+		PP_0926	0.32	+0.9
1,068,138	+		PP_0926	0.32	+1.0
1,068,139	-		PP_0926	0.32	-0.3
1,068,139	-		PP_0926	0.32	+0.5
1,068,139	-		PP_0926	0.32	-0.8
1,068,140	+		PP_0926	0.32	+1.2
1,068,201	+		PP_0926	0.39	-0.2
1,068,202	-		PP_0926	0.39	+0.1
1,068,210	+		PP_0926	0.40	+0.0
1,068,211	-		PP_0926	0.40	-1.8
1,068,211	-		PP_0926	0.40	+0.2
1,068,258	+		PP_0926	0.45	+1.9
1,068,258	+		PP_0926	0.45	-1.4
1,068,258	+		PP_0926	0.45	-0.7
1,068,258	+		PP_0926	0.45	+0.7
1,068,258	+		PP_0926	0.45	-0.3
1,068,259	-		PP_0926	0.45	-0.8
1,068,259	-		PP_0926	0.45	+0.8
1,068,281	-		PP_0926	0.47	-0.2
1,068,291	+		PP_0926	0.48	+0.2
1,068,504	-		PP_0926	0.71	+0.5
1,068,504	-		PP_0926	0.71	-1.4
1,068,624	+		PP_0926	0.83	+0.0
1,068,625	-				+0.0
1,068,625	-		PP_0926	0.83	-0.3
1,068,625	-		PP_0926	0.83	-1.2
1,068,625	-		PP_0926	0.83	+0.1
1,068,628	+				-2.2
1,068,628	+		PP_0926	0.84	+0.3
1,068,629	-		PP_0926	0.84	-1.3
1,068,629	-		PP_0926	0.84	+0.1
1,068,654	+		PP_0926	0.86	-0.6
1,068,654	+		PP_0926	0.86	+0.7
1,068,654	+		PP_0926	0.86	-1.0
1,068,654	+		PP_0926	0.86	-0.7
1,068,654	+		PP_0926	0.86	+0.5
1,068,713	+				-2.2
1,068,714	-				-4.3
1,068,781	-				-0.4
1,068,781	-				+1.1
1,068,781	-				+0.7
1,068,798	+				-0.5
1,068,826	+				+1.2
1,068,827	-				-0.2
1,068,827	-				-2.5
1,068,827	-				+0.7
1,069,092	-		PP_0927	0.19	+1.4
1,069,142	+		PP_0927	0.22	-1.2
1,069,142	+		PP_0927	0.22	-4.0
1,069,143	-		PP_0927	0.22	+0.5
1,069,143	-		PP_0927	0.22	+0.6
1,069,143	-		PP_0927	0.22	-0.3
1,069,180	+		PP_0927	0.25	+0.0
1,069,184	+		PP_0927	0.25	-3.2
1,069,184	+		PP_0927	0.25	-3.8
1,069,185	-		PP_0927	0.25	-0.3
1,069,185	-		PP_0927	0.25	-1.7
1,069,185	-		PP_0927	0.25	+1.9
1,069,185	-		PP_0927	0.25	-1.0
1,069,193	+		PP_0927	0.26	+0.8
1,069,193	+		PP_0927	0.26	-0.3
1,069,193	+		PP_0927	0.26	+0.2
1,069,193	+		PP_0927	0.26	-0.5
1,069,272	+		PP_0927	0.32	-2.6
1,069,272	+		PP_0927	0.32	+0.8
1,069,273	-		PP_0927	0.32	+1.2
1,069,273	-		PP_0927	0.32	-0.0
1,069,281	-		PP_0927	0.32	-2.4
1,069,281	-		PP_0927	0.32	+0.9
1,069,447	-		PP_0927	0.45	+0.7
1,069,447	-		PP_0927	0.45	+1.5
1,069,562	+		PP_0927	0.53	+0.5
1,069,562	+		PP_0927	0.53	-0.7
1,069,562	+		PP_0927	0.53	+0.4
1,069,562	+		PP_0927	0.53	-1.7
1,069,563	-		PP_0927	0.53	+0.2
1,069,563	-				+0.0
1,069,567	+		PP_0927	0.53	+0.9
1,069,568	-		PP_0927	0.54	+2.3
1,069,581	-		PP_0927	0.54	+0.9
1,069,613	+		PP_0927	0.57	+0.8
1,069,613	+		PP_0927	0.57	+0.3
1,069,614	-		PP_0927	0.57	-3.1
1,069,703	-		PP_0927	0.63	+0.2
1,069,703	-		PP_0927	0.63	-0.2
1,069,703	-		PP_0927	0.63	-0.8
1,069,733	+		PP_0927	0.66	-0.5
1,069,733	+		PP_0927	0.66	-1.8
1,069,734	-		PP_0927	0.66	-2.4
1,069,748	+		PP_0927	0.67	+0.5
1,069,748	+		PP_0927	0.67	-0.2
1,069,748	+		PP_0927	0.67	+0.0
1,069,749	-		PP_0927	0.67	+0.5
1,069,756	+		PP_0927	0.67	-2.8
1,069,762	+		PP_0927	0.68	+1.7
1,069,763	-		PP_0927	0.68	+1.0
1,069,763	-		PP_0927	0.68	+2.0
1,069,763	-		PP_0927	0.68	+0.3
1,069,763	-		PP_0927	0.68	+0.5
1,069,763	-		PP_0927	0.68	+0.7
1,069,889	+		PP_0927	0.77	-0.9
1,069,890	-		PP_0927	0.77	+0.9
1,070,025	-		PP_0927	0.87	+0.7
1,070,054	+		PP_0927	0.89	+0.9
1,070,054	+		PP_0927	0.89	+1.6
1,070,054	+		PP_0927	0.89	+1.0
1,070,054	+		PP_0927	0.89	-5.1
1,070,055	-		PP_0927	0.89	-3.0
1,070,088	+				+0.0
1,070,089	-				+0.6
1,070,096	+				+0.8
1,070,096	+				-0.9
1,070,096	+				-1.8
1,070,096	+				+0.4
1,070,214	+				-0.3
1,070,221	+				+1.5
1,070,222	-				-0.3
1,070,222	-				-0.5
1,070,296	-				-0.8
1,070,376	+				-0.2
1,070,376	+				+0.6
1,070,389	+				+0.1
1,070,405	+				-1.1
1,070,406	-				+0.7
1,070,409	+				-2.4
1,070,409	+				+0.1
1,070,409	+				-0.4
1,070,409	+				-0.2
1,070,410	-				-1.4
1,070,410	-				-2.5
1,070,410	-				+0.7
1,070,410	-				-1.0
1,070,410	-				-1.4
1,070,450	-		PP_0928	0.10	-2.7
1,070,458	+		PP_0928	0.11	-0.6
1,070,458	+		PP_0928	0.11	-0.8
1,070,481	+		PP_0928	0.13	+1.2
1,070,482	-		PP_0928	0.13	-0.0
1,070,541	+		PP_0928	0.19	-0.7
1,070,542	-		PP_0928	0.19	+0.2
1,070,579	+		PP_0928	0.23	-0.0
1,070,579	+		PP_0928	0.23	-0.0
1,070,579	+		PP_0928	0.23	-4.0
1,070,579	+		PP_0928	0.23	+0.4
1,070,580	-		PP_0928	0.23	+0.6
1,070,580	-		PP_0928	0.23	-0.4
1,070,580	-		PP_0928	0.23	+0.1
1,070,788	+		PP_0928	0.43	+1.7
1,070,791	+		PP_0928	0.43	+1.0
1,070,791	+		PP_0928	0.43	-0.6
1,070,791	+		PP_0928	0.43	-1.0
1,070,792	-		PP_0928	0.43	-0.2
1,070,792	-		PP_0928	0.43	-4.0
1,070,792	-		PP_0928	0.43	-0.5
1,070,792	-		PP_0928	0.43	-1.5
1,070,882	+		PP_0928	0.52	+0.8
1,070,882	+		PP_0928	0.52	-1.8
1,070,896	+		PP_0928	0.53	-0.4
1,070,897	-		PP_0928	0.53	-0.4
1,070,946	+		PP_0928	0.58	-0.2
1,070,959	-		PP_0928	0.59	+0.0
1,070,992	-		PP_0928	0.62	+2.8
1,071,011	+		PP_0928	0.64	+1.3
1,071,011	+		PP_0928	0.64	-0.0
1,071,012	-		PP_0928	0.64	-0.7
1,071,012	-		PP_0928	0.64	+0.3
1,071,012	-		PP_0928	0.64	-1.8
1,071,164	+		PP_0928	0.79	+0.7
1,071,165	-		PP_0928	0.79	-1.1