Strain Fitness in Pseudomonas putida KT2440 around PP_0864

Experiment: 3-methyl-1-butanol 0.25 vol% (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-1-butanol 0.25 vol% (C)
1,000,848	-		PP_0862	0.75	-1.9
1,000,985	+				-0.5
1,000,985	+				+0.0
1,000,986	-				+2.6
1,000,986	-				+3.4
1,000,986	-				-1.3
1,000,986	-				+1.2
1,000,990	+				+0.2
1,000,990	+				+1.8
1,000,991	-				+0.3
1,000,991	-				+0.1
1,001,367	+		PP_0863	0.44	-0.7
1,001,367	+		PP_0863	0.44	-0.2
1,001,368	-		PP_0863	0.45	-1.7
1,001,368	-		PP_0863	0.45	+1.7
1,001,368	-		PP_0863	0.45	-0.8
1,001,368	-				-0.7
1,001,368	-		PP_0863	0.45	+1.5
1,001,368	-		PP_0863	0.45	-2.1
1,001,369	+		PP_0863	0.45	+0.4
1,001,369	+		PP_0863	0.45	+0.4
1,001,369	+		PP_0863	0.45	-0.1
1,001,369	+		PP_0863	0.45	-0.5
1,001,369	+		PP_0863	0.45	-0.9
1,001,369	+		PP_0863	0.45	+0.3
1,001,369	+		PP_0863	0.45	+0.6
1,001,369	+		PP_0863	0.45	+0.1
1,001,369	+		PP_0863	0.45	-1.3
1,001,369	+		PP_0863	0.45	-0.6
1,001,370	-		PP_0863	0.45	-2.1
1,001,370	-		PP_0863	0.45	+0.2
1,001,370	-		PP_0863	0.45	-3.3
1,001,370	-		PP_0863	0.45	+0.6
1,001,370	-		PP_0863	0.45	-0.2
1,001,370	-		PP_0863	0.45	-1.0
1,001,370	-		PP_0863	0.45	+0.7
1,001,370	-		PP_0863	0.45	+0.1
1,001,371	+		PP_0863	0.45	-0.0
1,001,371	+		PP_0863	0.45	-0.5
1,001,439	-		PP_0863	0.54	+0.6
1,001,484	-		PP_0863	0.60	+0.2
1,001,484	-		PP_0863	0.60	-2.6
1,001,484	-		PP_0863	0.60	-3.9
1,001,492	+		PP_0863	0.61	-0.7
1,001,493	-		PP_0863	0.61	-1.2
1,001,777	-				-2.0
1,001,824	+				+0.9
1,001,824	+				+1.5
1,001,830	+				+1.0
1,001,830	+				-0.2
1,001,830	+				-1.5
1,001,830	+				-0.4
1,001,830	+				+1.7
1,001,830	+				-0.7
1,001,831	-				+0.2
1,001,833	+				-0.2
1,001,834	-				+1.0
1,001,875	+				-0.2
1,001,876	-				+0.5
1,001,888	-				-0.6
1,001,908	+				+1.0
1,001,947	+		PP_0864	0.11	+2.0
1,001,947	+		PP_0864	0.11	-0.3
1,001,948	-		PP_0864	0.11	+2.1
1,001,948	-		PP_0864	0.11	-4.0
1,001,953	+		PP_0864	0.11	+1.6
1,001,953	+		PP_0864	0.11	+1.2
1,001,953	+		PP_0864	0.11	+1.0
1,001,953	+		PP_0864	0.11	-0.4
1,001,953	+		PP_0864	0.11	+0.1
1,001,954	-		PP_0864	0.11	+1.3
1,001,954	-				+3.6
1,001,963	-		PP_0864	0.12	+2.4
1,001,963	-		PP_0864	0.12	-3.0
1,002,100	+		PP_0864	0.24	-4.0
1,002,100	+		PP_0864	0.24	-0.5
1,002,100	+		PP_0864	0.24	+0.9
1,002,101	-		PP_0864	0.24	-0.0
1,002,263	-		PP_0864	0.38	-2.4
1,002,292	+		PP_0864	0.40	-1.6
1,002,293	-		PP_0864	0.40	+0.6
1,002,293	-		PP_0864	0.40	+1.0
1,002,369	+		PP_0864	0.47	+0.7
1,002,560	+		PP_0864	0.63	+0.1
1,002,560	+		PP_0864	0.63	+1.7
1,002,568	+		PP_0864	0.64	-2.1
1,002,631	+		PP_0864	0.69	+0.3
1,002,631	+		PP_0864	0.69	-0.3
1,002,632	-		PP_0864	0.70	+0.4
1,002,652	+		PP_0864	0.71	+1.8
1,002,652	+		PP_0864	0.71	+1.2
1,002,652	+		PP_0864	0.71	-2.0
1,002,653	-		PP_0864	0.71	+1.1
1,002,653	-		PP_0864	0.71	+1.7
1,002,653	-		PP_0864	0.71	-0.6
1,002,658	+		PP_0864	0.72	+0.8
1,002,658	+		PP_0864	0.72	-0.6
1,002,667	+		PP_0864	0.73	+1.8
1,002,694	+		PP_0864	0.75	-1.9
1,002,745	+				-0.4
1,002,826	+		PP_0864	0.86	+1.6
1,002,827	-		PP_0864	0.86	-0.0
1,002,827	-		PP_0864	0.86	+1.2
1,002,829	+		PP_0864	0.86	+1.8
1,002,830	-		PP_0864	0.87	+1.5
1,002,868	+		PP_0864	0.90	-2.6
1,002,869	-		PP_0864	0.90	+0.7
1,002,869	-		PP_0864	0.90	-1.5
1,002,900	+				+0.7
1,002,900	+				+1.5
1,002,901	-				-2.1
1,002,964	+				+0.6
1,002,965	-				-3.9
1,003,018	+				-2.1
1,003,018	+				-1.3
1,003,073	+				+0.8
1,003,074	-				+0.7
1,003,123	-				-1.8
1,003,355	+				+1.2
1,003,355	+				+0.9
1,003,356	-				+0.9
1,003,356	-				-1.2
1,003,360	-				-4.2
1,003,386	+				-3.0
1,003,387	-				+0.7
1,003,468	-				+0.1
1,003,524	+				+1.5
1,003,525	-				+1.2
1,003,525	-				-0.2
1,003,674	-		PP_0865	0.37	+0.4
1,003,674	-		PP_0865	0.37	+1.2
1,003,770	+		PP_0865	0.57	+0.9
1,003,770	+		PP_0865	0.57	+0.1
1,003,770	+		PP_0865	0.57	-1.8
1,003,771	-		PP_0865	0.57	+1.0
1,003,927	-		PP_0865	0.89	+1.1
1,003,927	-		PP_0865	0.89	+0.6
1,003,928	+		PP_0865	0.89	-0.6
1,003,928	+		PP_0865	0.89	-0.9
1,003,929	-		PP_0865	0.90	+0.3
1,003,929	-		PP_0865	0.90	+0.5