Strain Fitness in Pseudomonas putida KT2440 around PP_0617

Experiment: 3-methyl-1-butanol 0.25 vol% (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0615 and PP_0616 overlap by 1 nucleotidesPP_0616 and PP_0617 overlap by 1 nucleotidesPP_0617 and PP_0618 are separated by 1 nucleotidesPP_0618 and PP_0619 are separated by 65 nucleotides PP_0615: PP_0615 - Branched-chain amino acid ABC transporter, ATP-binding protein, at 721,302 to 721,997 _0615 PP_0616: PP_0616 - Branched-chain amino acid ABC transporter, ATP binding protein, at 721,997 to 722,749 _0616 PP_0617: PP_0617 - Branched-chain amino acid ABC transporter, permease protein, at 722,749 to 723,768 _0617 PP_0618: PP_0618 - Branched-chain amino acid ABC transporter, permease protein, at 723,770 to 724,630 _0618 PP_0619: PP_0619 - Branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein, at 724,696 to 725,898 _0619 Position (kb) 722 723 724Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 721.782 kb on - strand, within PP_0615at 721.908 kb on + strand, within PP_0615at 721.966 kb on + strandat 721.966 kb on + strandat 721.969 kb on + strandat 721.969 kb on + strandat 721.970 kb on - strandat 721.970 kb on - strandat 721.970 kb on - strandat 722.016 kb on + strandat 722.017 kb on - strandat 722.144 kb on + strand, within PP_0616at 722.144 kb on + strand, within PP_0616at 722.144 kb on + strand, within PP_0616at 722.145 kb on - strand, within PP_0616at 722.152 kb on + strand, within PP_0616at 722.152 kb on + strand, within PP_0616at 722.153 kb on - strand, within PP_0616at 722.739 kb on + strandat 722.739 kb on + strandat 722.740 kb on - strandat 722.740 kb on - strandat 722.750 kb on + strandat 722.750 kb on + strandat 722.751 kb on - strandat 722.751 kb on - strandat 722.751 kb on - strandat 722.751 kb on - strandat 723.065 kb on + strand, within PP_0617at 723.066 kb on - strand, within PP_0617at 723.066 kb on - strand, within PP_0617at 723.066 kb on - strand, within PP_0617at 723.066 kb on - strand, within PP_0617at 723.260 kb on + strand, within PP_0617at 723.260 kb on + strand, within PP_0617at 723.260 kb on + strand, within PP_0617at 723.260 kb on + strand, within PP_0617at 723.260 kb on + strand, within PP_0617at 723.260 kb on + strand, within PP_0617at 723.260 kb on + strand, within PP_0617at 723.260 kb on + strand, within PP_0617at 723.260 kb on + strand, within PP_0617at 723.261 kb on - strand, within PP_0617at 723.261 kb on - strand, within PP_0617at 723.261 kb on - strand, within PP_0617at 723.290 kb on - strand, within PP_0617at 723.290 kb on - strand, within PP_0617at 723.369 kb on + strand, within PP_0617at 723.369 kb on + strand, within PP_0617at 723.370 kb on - strand, within PP_0617at 723.370 kb on - strand, within PP_0617at 723.371 kb on + strand, within PP_0617at 723.372 kb on - strand, within PP_0617at 723.372 kb on - strand, within PP_0617at 723.372 kb on - strand, within PP_0617at 723.372 kb on - strand, within PP_0617at 723.383 kb on + strand, within PP_0617at 723.383 kb on + strand, within PP_0617at 723.383 kb on + strand, within PP_0617at 723.422 kb on + strand, within PP_0617at 723.422 kb on + strand, within PP_0617at 723.422 kb on + strand, within PP_0617at 723.422 kb on + strand, within PP_0617at 723.423 kb on - strand, within PP_0617at 723.423 kb on - strand, within PP_0617at 723.423 kb on - strand, within PP_0617at 723.423 kb on - strand, within PP_0617at 723.423 kb on - strand, within PP_0617at 723.599 kb on + strand, within PP_0617at 723.706 kb on + strandat 723.706 kb on + strandat 723.707 kb on - strandat 723.828 kb on + strandat 723.828 kb on + strandat 723.829 kb on - strandat 724.010 kb on + strand, within PP_0618at 724.011 kb on - strand, within PP_0618at 724.011 kb on - strand, within PP_0618at 724.210 kb on - strand, within PP_0618at 724.212 kb on + strand, within PP_0618at 724.212 kb on + strand, within PP_0618at 724.212 kb on + strand, within PP_0618at 724.213 kb on - strand, within PP_0618at 724.218 kb on + strand, within PP_0618at 724.218 kb on + strand, within PP_0618at 724.219 kb on - strand, within PP_0618at 724.219 kb on - strand, within PP_0618at 724.235 kb on + strand, within PP_0618at 724.368 kb on + strand, within PP_0618at 724.369 kb on - strand, within PP_0618at 724.369 kb on - strand, within PP_0618at 724.369 kb on - strand, within PP_0618at 724.476 kb on + strand, within PP_0618at 724.486 kb on - strand, within PP_0618at 724.486 kb on - strand, within PP_0618at 724.575 kb on + strandat 724.575 kb on + strandat 724.575 kb on + strandat 724.575 kb on + strandat 724.575 kb on + strandat 724.575 kb on + strandat 724.576 kb on - strandat 724.576 kb on - strandat 724.576 kb on - strandat 724.618 kb on - strandat 724.667 kb on + strandat 724.667 kb on + strandat 724.667 kb on + strandat 724.667 kb on + strandat 724.667 kb on + strandat 724.667 kb on + strandat 724.668 kb on - strandat 724.668 kb on - strandat 724.668 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 3-methyl-1-butanol 0.25 vol% (C)
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721,782 - PP_0615 0.69 +1.3
721,908 + PP_0615 0.87 +2.5
721,966 + +0.1
721,966 + -1.8
721,969 + -1.7
721,969 + -0.5
721,970 - -0.5
721,970 - +1.2
721,970 - +1.4
722,016 + -0.7
722,017 - -0.3
722,144 + PP_0616 0.20 -0.5
722,144 + PP_0616 0.20 +0.3
722,144 + PP_0616 0.20 +0.1
722,145 - PP_0616 0.20 +1.0
722,152 + PP_0616 0.21 +1.9
722,152 + PP_0616 0.21 +0.5
722,153 - PP_0616 0.21 +0.5
722,739 + -1.4
722,739 + -1.7
722,740 - +1.1
722,740 - +2.7
722,750 + -1.1
722,750 + -2.0
722,751 - +1.3
722,751 - +0.7
722,751 - -0.8
722,751 - +0.2
723,065 + PP_0617 0.31 -0.5
723,066 - PP_0617 0.31 -2.9
723,066 - PP_0617 0.31 -0.1
723,066 - PP_0617 0.31 -0.3
723,066 - PP_0617 0.31 -1.2
723,260 + PP_0617 0.50 -0.2
723,260 + PP_0617 0.50 +0.6
723,260 + PP_0617 0.50 -0.9
723,260 + PP_0617 0.50 -1.0
723,260 + PP_0617 0.50 -0.2
723,260 + PP_0617 0.50 -0.8
723,260 + PP_0617 0.50 -2.4
723,260 + PP_0617 0.50 -0.6
723,260 + PP_0617 0.50 -0.6
723,261 - PP_0617 0.50 -3.2
723,261 - PP_0617 0.50 -0.4
723,261 - PP_0617 0.50 +0.7
723,290 - PP_0617 0.53 -1.8
723,290 - PP_0617 0.53 -1.1
723,369 + PP_0617 0.61 +1.2
723,369 + PP_0617 0.61 -3.1
723,370 - PP_0617 0.61 -0.9
723,370 - PP_0617 0.61 -3.1
723,371 + PP_0617 0.61 -3.8
723,372 - PP_0617 0.61 +0.4
723,372 - PP_0617 0.61 +0.0
723,372 - PP_0617 0.61 +0.2
723,372 - PP_0617 0.61 -3.7
723,383 + PP_0617 0.62 +0.5
723,383 + PP_0617 0.62 -1.6
723,383 + PP_0617 0.62 -2.0
723,422 + PP_0617 0.66 +0.5
723,422 + PP_0617 0.66 -1.9
723,422 + PP_0617 0.66 -3.3
723,422 + PP_0617 0.66 +1.2
723,423 - PP_0617 0.66 +1.7
723,423 - PP_0617 0.66 -2.7
723,423 - PP_0617 0.66 +0.2
723,423 - PP_0617 0.66 +1.4
723,423 - PP_0617 0.66 -0.9
723,599 + PP_0617 0.83 +1.5
723,706 + -2.4
723,706 + +1.9
723,707 - +0.0
723,828 + -3.1
723,828 + -2.7
723,829 - +0.6
724,010 + PP_0618 0.28 -0.3
724,011 - PP_0618 0.28 -3.6
724,011 - PP_0618 0.28 +1.7
724,210 - PP_0618 0.51 +1.1
724,212 + PP_0618 0.51 +0.6
724,212 + PP_0618 0.51 -3.6
724,212 + PP_0618 0.51 +0.2
724,213 - PP_0618 0.51 -1.3
724,218 + PP_0618 0.52 -0.9
724,218 + PP_0618 0.52 +1.0
724,219 - PP_0618 0.52 -3.0
724,219 - PP_0618 0.52 +0.4
724,235 + PP_0618 0.54 +0.8
724,368 + PP_0618 0.69 +1.0
724,369 - PP_0618 0.70 +1.3
724,369 - PP_0618 0.70 -1.4
724,369 - PP_0618 0.70 +0.2
724,476 + PP_0618 0.82 -0.4
724,486 - PP_0618 0.83 -0.0
724,486 - PP_0618 0.83 -0.1
724,575 + -2.1
724,575 + +1.2
724,575 + +0.1
724,575 + +1.2
724,575 + +0.2
724,575 + +0.3
724,576 - -4.2
724,576 - -0.6
724,576 - -0.4
724,618 - +0.5
724,667 + +0.4
724,667 + -2.4
724,667 + -2.0
724,667 + -1.3
724,667 + +0.5
724,667 + +0.5
724,668 - +0.2
724,668 - +0.9
724,668 - -3.0

Or see this region's nucleotide sequence