Strain Fitness in Pseudomonas putida KT2440 around PP_0491

Experiment: 3-methyl-1-butanol 0.25 vol% (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0489 and PP_0490 overlap by 1 nucleotidesPP_0490 and PP_0491 overlap by 4 nucleotidesPP_0491 and PP_0492 overlap by 26 nucleotides PP_0489: PP_0489 - formate dehydrogenase-O major subunit, at 574,964 to 578,032 _0489 PP_0490: PP_0490 - formate dehydrogenase-O, beta subunit, at 578,032 to 578,982 _0490 PP_0491: PP_0491 - formate dehydrogenase-O, gamma subunit, at 578,979 to 579,635 _0491 PP_0492: PP_0492 - formate dehydrogenase formation protein, at 579,610 to 580,566 _0492 Position (kb) 578 579 580Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 578.124 kb on + strandat 578.212 kb on + strand, within PP_0490at 578.212 kb on + strand, within PP_0490at 578.213 kb on - strand, within PP_0490at 578.213 kb on - strand, within PP_0490at 578.466 kb on + strand, within PP_0490at 578.466 kb on + strand, within PP_0490at 578.491 kb on + strand, within PP_0490at 578.491 kb on + strandat 578.492 kb on - strand, within PP_0490at 578.492 kb on - strand, within PP_0490at 578.642 kb on - strand, within PP_0490at 578.696 kb on - strand, within PP_0490at 578.696 kb on - strand, within PP_0490at 578.728 kb on + strand, within PP_0490at 578.728 kb on + strand, within PP_0490at 578.845 kb on + strand, within PP_0490at 578.845 kb on + strand, within PP_0490at 578.846 kb on - strand, within PP_0490at 578.846 kb on - strand, within PP_0490at 578.938 kb on + strandat 578.938 kb on + strandat 578.938 kb on + strandat 578.938 kb on + strandat 578.938 kb on + strandat 578.938 kb on + strandat 578.939 kb on - strandat 578.939 kb on - strandat 579.006 kb on + strandat 579.007 kb on - strandat 579.023 kb on + strandat 579.023 kb on + strandat 579.024 kb on - strandat 579.024 kb on - strandat 579.196 kb on + strand, within PP_0491at 579.196 kb on + strand, within PP_0491at 579.196 kb on + strand, within PP_0491at 579.197 kb on - strand, within PP_0491at 579.197 kb on - strand, within PP_0491at 579.303 kb on + strand, within PP_0491at 579.303 kb on + strand, within PP_0491at 579.304 kb on - strand, within PP_0491at 579.304 kb on - strand, within PP_0491at 579.304 kb on - strand, within PP_0491at 579.304 kb on - strand, within PP_0491at 579.391 kb on - strand, within PP_0491at 579.391 kb on - strand, within PP_0491at 579.489 kb on + strand, within PP_0491at 579.489 kb on + strand, within PP_0491at 579.490 kb on - strand, within PP_0491at 579.490 kb on - strand, within PP_0491at 579.650 kb on + strandat 579.650 kb on + strandat 579.651 kb on - strandat 579.651 kb on - strandat 579.779 kb on - strand, within PP_0492at 579.779 kb on - strand, within PP_0492at 579.801 kb on - strand, within PP_0492at 579.827 kb on + strand, within PP_0492at 579.956 kb on + strand, within PP_0492at 579.957 kb on - strand, within PP_0492at 580.010 kb on + strand, within PP_0492at 580.010 kb on + strand, within PP_0492at 580.011 kb on - strand, within PP_0492at 580.011 kb on - strand, within PP_0492at 580.069 kb on + strand, within PP_0492at 580.069 kb on + strand, within PP_0492at 580.258 kb on + strand, within PP_0492at 580.315 kb on + strand, within PP_0492at 580.315 kb on + strand, within PP_0492at 580.316 kb on - strand, within PP_0492at 580.435 kb on + strand, within PP_0492at 580.435 kb on + strand, within PP_0492at 580.436 kb on - strand, within PP_0492at 580.436 kb on - strand, within PP_0492at 580.499 kb on + strandat 580.499 kb on + strandat 580.499 kb on + strandat 580.499 kb on + strandat 580.499 kb on + strandat 580.499 kb on + strandat 580.499 kb on + strandat 580.499 kb on + strandat 580.499 kb on + strandat 580.500 kb on - strandat 580.500 kb on - strandat 580.500 kb on - strandat 580.500 kb on - strandat 580.500 kb on - strandat 580.572 kb on + strandat 580.617 kb on + strandat 580.617 kb on + strandat 580.618 kb on - strandat 580.623 kb on + strandat 580.624 kb on - strandat 580.624 kb on - strandat 580.624 kb on - strandat 580.624 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 3-methyl-1-butanol 0.25 vol% (C)
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578,124 + +0.6
578,212 + PP_0490 0.19 -0.4
578,212 + PP_0490 0.19 +1.4
578,213 - PP_0490 0.19 -3.4
578,213 - PP_0490 0.19 +1.2
578,466 + PP_0490 0.46 -0.7
578,466 + PP_0490 0.46 -1.1
578,491 + PP_0490 0.48 +0.2
578,491 + +1.1
578,492 - PP_0490 0.48 -0.1
578,492 - PP_0490 0.48 +0.3
578,642 - PP_0490 0.64 +1.2
578,696 - PP_0490 0.70 +0.7
578,696 - PP_0490 0.70 -1.0
578,728 + PP_0490 0.73 -1.5
578,728 + PP_0490 0.73 +0.7
578,845 + PP_0490 0.85 -0.6
578,845 + PP_0490 0.85 +0.1
578,846 - PP_0490 0.86 +1.7
578,846 - PP_0490 0.86 +2.3
578,938 + +1.8
578,938 + +1.3
578,938 + +0.3
578,938 + -0.1
578,938 + -0.8
578,938 + +0.8
578,939 - -1.2
578,939 - -1.8
579,006 + +1.3
579,007 - +1.0
579,023 + +0.1
579,023 + +0.8
579,024 - -0.1
579,024 - +0.9
579,196 + PP_0491 0.33 +2.9
579,196 + PP_0491 0.33 +1.9
579,196 + PP_0491 0.33 -0.1
579,197 - PP_0491 0.33 +1.4
579,197 - PP_0491 0.33 +0.9
579,303 + PP_0491 0.49 +2.1
579,303 + PP_0491 0.49 +0.6
579,304 - PP_0491 0.49 +0.8
579,304 - PP_0491 0.49 +2.4
579,304 - PP_0491 0.49 +0.8
579,304 - PP_0491 0.49 -0.5
579,391 - PP_0491 0.63 -2.0
579,391 - PP_0491 0.63 +0.1
579,489 + PP_0491 0.78 -3.3
579,489 + PP_0491 0.78 -0.6
579,490 - PP_0491 0.78 +0.8
579,490 - PP_0491 0.78 -1.9
579,650 + -2.5
579,650 + +0.1
579,651 - +0.8
579,651 - +0.6
579,779 - PP_0492 0.18 -1.8
579,779 - PP_0492 0.18 +0.1
579,801 - PP_0492 0.20 -4.3
579,827 + PP_0492 0.23 -2.3
579,956 + PP_0492 0.36 -2.3
579,957 - PP_0492 0.36 +1.0
580,010 + PP_0492 0.42 -3.4
580,010 + PP_0492 0.42 -0.4
580,011 - PP_0492 0.42 +2.0
580,011 - PP_0492 0.42 -2.5
580,069 + PP_0492 0.48 -0.7
580,069 + PP_0492 0.48 -2.7
580,258 + PP_0492 0.68 -1.5
580,315 + PP_0492 0.74 -0.1
580,315 + PP_0492 0.74 -1.2
580,316 - PP_0492 0.74 +1.7
580,435 + PP_0492 0.86 +2.0
580,435 + PP_0492 0.86 +1.3
580,436 - PP_0492 0.86 -0.2
580,436 - PP_0492 0.86 +1.1
580,499 + -0.4
580,499 + +0.5
580,499 + -1.3
580,499 + +1.2
580,499 + +0.3
580,499 + +0.7
580,499 + -2.8
580,499 + +0.3
580,499 + -0.4
580,500 - +0.1
580,500 - +0.6
580,500 - +0.9
580,500 - +0.8
580,500 - +0.1
580,572 + -0.1
580,617 + +1.7
580,617 + -1.8
580,618 - +0.8
580,623 + -1.5
580,624 - +1.4
580,624 - +1.7
580,624 - -2.1
580,624 - -1.0

Or see this region's nucleotide sequence