Strain Fitness in Pseudomonas putida KT2440 around PP_0481

Experiment: 3-methyl-1-butanol 0.25 vol% (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0479 and PP_0480 are separated by 42 nucleotidesPP_0480 and PP_0481 are separated by 172 nucleotidesPP_0481 and PP_0482 are separated by 163 nucleotidesPP_0482 and PP_0483 are separated by 72 nucleotides PP_0479: PP_0479 - DNA-directed RNA polymerase subunit alpha, at 562,918 to 563,919 _0479 PP_0480: PP_0480 - 50S ribosomal protein L17, at 563,962 to 564,348 _0480 PP_0481: PP_0481 - Catalase, at 564,521 to 565,960 _0481 PP_0482: PP_0482 - bacterioferritin, at 566,124 to 566,588 _0482 PP_0483: PP_0483 - excinuclease (uvrABC system protein A), at 566,661 to 569,495 _0483 Position (kb) 564 565 566Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 564.469 kb on + strandat 564.469 kb on + strandat 564.478 kb on + strandat 564.478 kb on + strandat 564.559 kb on - strandat 564.699 kb on - strand, within PP_0481at 564.699 kb on - strand, within PP_0481at 564.703 kb on + strand, within PP_0481at 564.703 kb on + strand, within PP_0481at 564.704 kb on - strand, within PP_0481at 564.724 kb on + strand, within PP_0481at 564.736 kb on + strand, within PP_0481at 564.736 kb on + strand, within PP_0481at 564.787 kb on - strand, within PP_0481at 564.787 kb on - strand, within PP_0481at 564.864 kb on - strand, within PP_0481at 564.864 kb on - strand, within PP_0481at 564.864 kb on - strand, within PP_0481at 564.910 kb on - strand, within PP_0481at 564.910 kb on - strand, within PP_0481at 564.931 kb on + strand, within PP_0481at 564.931 kb on + strand, within PP_0481at 564.931 kb on + strand, within PP_0481at 564.931 kb on + strand, within PP_0481at 564.931 kb on + strand, within PP_0481at 564.932 kb on - strand, within PP_0481at 564.946 kb on + strand, within PP_0481at 564.947 kb on - strand, within PP_0481at 565.112 kb on + strand, within PP_0481at 565.112 kb on + strand, within PP_0481at 565.112 kb on + strand, within PP_0481at 565.112 kb on + strand, within PP_0481at 565.113 kb on - strand, within PP_0481at 565.113 kb on - strand, within PP_0481at 565.220 kb on - strand, within PP_0481at 565.232 kb on + strand, within PP_0481at 565.427 kb on + strand, within PP_0481at 565.468 kb on + strand, within PP_0481at 565.468 kb on + strand, within PP_0481at 565.469 kb on - strand, within PP_0481at 565.469 kb on - strand, within PP_0481at 565.469 kb on - strand, within PP_0481at 565.518 kb on + strand, within PP_0481at 565.519 kb on - strand, within PP_0481at 565.526 kb on + strand, within PP_0481at 565.607 kb on + strand, within PP_0481at 565.607 kb on + strand, within PP_0481at 565.608 kb on - strand, within PP_0481at 565.640 kb on + strand, within PP_0481at 565.641 kb on - strand, within PP_0481at 565.641 kb on - strand, within PP_0481at 565.641 kb on - strand, within PP_0481at 565.641 kb on - strand, within PP_0481at 565.645 kb on + strand, within PP_0481at 565.673 kb on + strand, within PP_0481at 565.762 kb on + strand, within PP_0481at 565.769 kb on + strand, within PP_0481at 565.770 kb on - strand, within PP_0481at 565.834 kb on + strandat 565.834 kb on + strandat 565.887 kb on + strandat 565.887 kb on + strandat 565.887 kb on + strandat 565.892 kb on + strandat 565.892 kb on + strandat 565.893 kb on - strandat 565.917 kb on - strandat 566.010 kb on + strandat 566.011 kb on - strandat 566.066 kb on - strandat 566.066 kb on - strandat 566.086 kb on + strandat 566.086 kb on + strandat 566.086 kb on + strandat 566.086 kb on + strandat 566.087 kb on - strandat 566.095 kb on + strandat 566.095 kb on + strandat 566.096 kb on - strandat 566.143 kb on + strandat 566.144 kb on - strandat 566.144 kb on - strandat 566.144 kb on - strandat 566.144 kb on - strandat 566.151 kb on + strandat 566.151 kb on + strandat 566.152 kb on - strandat 566.152 kb on - strandat 566.196 kb on + strand, within PP_0482at 566.196 kb on + strand, within PP_0482at 566.196 kb on + strand, within PP_0482at 566.217 kb on + strand, within PP_0482at 566.218 kb on - strand, within PP_0482at 566.218 kb on - strand, within PP_0482at 566.244 kb on + strand, within PP_0482at 566.360 kb on + strand, within PP_0482at 566.361 kb on - strand, within PP_0482at 566.403 kb on + strand, within PP_0482at 566.403 kb on + strand, within PP_0482at 566.404 kb on - strand, within PP_0482at 566.404 kb on - strand, within PP_0482at 566.460 kb on + strand, within PP_0482at 566.460 kb on + strand, within PP_0482at 566.460 kb on + strand, within PP_0482at 566.460 kb on + strand, within PP_0482at 566.460 kb on + strand, within PP_0482at 566.461 kb on - strand, within PP_0482at 566.461 kb on - strand, within PP_0482at 566.461 kb on - strand, within PP_0482at 566.517 kb on + strand, within PP_0482at 566.518 kb on - strand, within PP_0482at 566.518 kb on - strand, within PP_0482at 566.586 kb on + strandat 566.586 kb on + strandat 566.586 kb on + strandat 566.586 kb on + strandat 566.587 kb on - strandat 566.587 kb on - strandat 566.587 kb on - strandat 566.587 kb on - strandat 566.587 kb on - strandat 566.587 kb on - strandat 566.607 kb on + strandat 566.630 kb on - strandat 566.659 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 3-methyl-1-butanol 0.25 vol% (C)
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564,469 + +0.6
564,469 + +1.0
564,478 + +1.2
564,478 + +0.9
564,559 - -0.4
564,699 - PP_0481 0.12 +1.6
564,699 - PP_0481 0.12 +0.1
564,703 + PP_0481 0.13 +2.4
564,703 + PP_0481 0.13 +0.3
564,704 - PP_0481 0.13 +0.6
564,724 + PP_0481 0.14 +2.0
564,736 + PP_0481 0.15 +1.9
564,736 + PP_0481 0.15 -0.2
564,787 - PP_0481 0.18 -3.4
564,787 - PP_0481 0.18 +1.3
564,864 - PP_0481 0.24 -0.2
564,864 - PP_0481 0.24 +0.6
564,864 - PP_0481 0.24 -0.2
564,910 - PP_0481 0.27 +0.0
564,910 - PP_0481 0.27 +1.2
564,931 + PP_0481 0.28 +2.1
564,931 + PP_0481 0.28 +0.9
564,931 + PP_0481 0.28 +1.1
564,931 + PP_0481 0.28 +1.2
564,931 + PP_0481 0.28 +2.3
564,932 - PP_0481 0.29 +0.7
564,946 + PP_0481 0.30 -1.3
564,947 - PP_0481 0.30 +0.0
565,112 + PP_0481 0.41 +1.5
565,112 + PP_0481 0.41 +1.0
565,112 + PP_0481 0.41 +0.3
565,112 + PP_0481 0.41 -1.6
565,113 - PP_0481 0.41 +0.7
565,113 - PP_0481 0.41 +1.5
565,220 - PP_0481 0.49 -1.7
565,232 + PP_0481 0.49 +0.2
565,427 + PP_0481 0.63 +1.8
565,468 + PP_0481 0.66 +3.5
565,468 + PP_0481 0.66 +1.1
565,469 - PP_0481 0.66 -2.3
565,469 - PP_0481 0.66 +1.5
565,469 - PP_0481 0.66 +0.7
565,518 + PP_0481 0.69 -2.2
565,519 - PP_0481 0.69 -0.1
565,526 + PP_0481 0.70 -0.6
565,607 + PP_0481 0.75 -0.4
565,607 + PP_0481 0.75 -0.4
565,608 - PP_0481 0.75 -3.4
565,640 + PP_0481 0.78 +1.0
565,641 - PP_0481 0.78 +0.1
565,641 - PP_0481 0.78 +1.7
565,641 - PP_0481 0.78 +1.1
565,641 - PP_0481 0.78 +1.2
565,645 + PP_0481 0.78 -0.2
565,673 + PP_0481 0.80 -0.9
565,762 + PP_0481 0.86 -0.1
565,769 + PP_0481 0.87 -1.3
565,770 - PP_0481 0.87 +0.1
565,834 + -0.6
565,834 + -2.3
565,887 + +1.3
565,887 + -2.2
565,887 + +1.7
565,892 + -2.6
565,892 + +0.1
565,893 - +0.3
565,917 - +0.9
566,010 + -0.6
566,011 - +0.2
566,066 - +2.6
566,066 - +1.2
566,086 + -1.1
566,086 + +1.3
566,086 + +0.6
566,086 + -3.6
566,087 - +0.5
566,095 + +0.6
566,095 + +1.3
566,096 - -1.8
566,143 + +0.3
566,144 - -0.4
566,144 - +0.7
566,144 - +0.5
566,144 - +0.1
566,151 + +0.7
566,151 + +0.3
566,152 - +0.5
566,152 - -1.5
566,196 + PP_0482 0.15 +1.1
566,196 + PP_0482 0.15 +1.3
566,196 + PP_0482 0.15 +1.3
566,217 + PP_0482 0.20 +0.1
566,218 - PP_0482 0.20 -0.9
566,218 - PP_0482 0.20 +0.9
566,244 + PP_0482 0.26 +1.1
566,360 + PP_0482 0.51 +0.3
566,361 - PP_0482 0.51 +2.7
566,403 + PP_0482 0.60 +0.6
566,403 + PP_0482 0.60 +0.6
566,404 - PP_0482 0.60 +0.4
566,404 - PP_0482 0.60 +0.9
566,460 + PP_0482 0.72 +0.5
566,460 + PP_0482 0.72 -3.4
566,460 + PP_0482 0.72 -3.2
566,460 + PP_0482 0.72 +1.4
566,460 + PP_0482 0.72 +0.4
566,461 - PP_0482 0.72 +0.1
566,461 - PP_0482 0.72 +1.8
566,461 - PP_0482 0.72 +1.7
566,517 + PP_0482 0.85 +2.0
566,518 - PP_0482 0.85 -4.1
566,518 - PP_0482 0.85 -1.4
566,586 + -3.0
566,586 + +0.3
566,586 + +0.1
566,586 + -0.3
566,587 - -1.7
566,587 - +1.4
566,587 - +0.3
566,587 - +1.6
566,587 - -3.0
566,587 - -3.1
566,607 + -0.3
566,630 - +0.8
566,659 - +0.6

Or see this region's nucleotide sequence