Experiment: 3-methyl-1-butanol 0.25 vol% (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0479 and PP_0480 are separated by 42 nucleotides PP_0480 and PP_0481 are separated by 172 nucleotides
PP_0479: PP_0479 - DNA-directed RNA polymerase subunit alpha, at 562,918 to 563,919
_0479
PP_0480: PP_0480 - 50S ribosomal protein L17, at 563,962 to 564,348
_0480
PP_0481: PP_0481 - Catalase, at 564,521 to 565,960
_0481
Position (kb) 563
564
565 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 564.469 kb on + strand at 564.469 kb on + strand at 564.478 kb on + strand at 564.478 kb on + strand at 564.559 kb on - strand at 564.699 kb on - strand, within PP_0481 at 564.699 kb on - strand, within PP_0481 at 564.703 kb on + strand, within PP_0481 at 564.703 kb on + strand, within PP_0481 at 564.704 kb on - strand, within PP_0481 at 564.724 kb on + strand, within PP_0481 at 564.736 kb on + strand, within PP_0481 at 564.736 kb on + strand, within PP_0481 at 564.787 kb on - strand, within PP_0481 at 564.787 kb on - strand, within PP_0481 at 564.864 kb on - strand, within PP_0481 at 564.864 kb on - strand, within PP_0481 at 564.864 kb on - strand, within PP_0481 at 564.910 kb on - strand, within PP_0481 at 564.910 kb on - strand, within PP_0481 at 564.931 kb on + strand, within PP_0481 at 564.931 kb on + strand, within PP_0481 at 564.931 kb on + strand, within PP_0481 at 564.931 kb on + strand, within PP_0481 at 564.931 kb on + strand, within PP_0481 at 564.932 kb on - strand, within PP_0481 at 564.946 kb on + strand, within PP_0481 at 564.947 kb on - strand, within PP_0481 at 565.112 kb on + strand, within PP_0481 at 565.112 kb on + strand, within PP_0481 at 565.112 kb on + strand, within PP_0481 at 565.112 kb on + strand, within PP_0481 at 565.113 kb on - strand, within PP_0481 at 565.113 kb on - strand, within PP_0481 at 565.220 kb on - strand, within PP_0481 at 565.232 kb on + strand, within PP_0481
Per-strain Table
Position Strand Gene LocusTag Fraction 3-methyl-1-butanol 0.25 vol% (C) remove 564,469 + +0.6 564,469 + +1.0 564,478 + +1.2 564,478 + +0.9 564,559 - -0.4 564,699 - PP_0481 0.12 +1.6 564,699 - PP_0481 0.12 +0.1 564,703 + PP_0481 0.13 +2.4 564,703 + PP_0481 0.13 +0.3 564,704 - PP_0481 0.13 +0.6 564,724 + PP_0481 0.14 +2.0 564,736 + PP_0481 0.15 +1.9 564,736 + PP_0481 0.15 -0.2 564,787 - PP_0481 0.18 -3.4 564,787 - PP_0481 0.18 +1.3 564,864 - PP_0481 0.24 -0.2 564,864 - PP_0481 0.24 +0.6 564,864 - PP_0481 0.24 -0.2 564,910 - PP_0481 0.27 +0.0 564,910 - PP_0481 0.27 +1.2 564,931 + PP_0481 0.28 +2.1 564,931 + PP_0481 0.28 +0.9 564,931 + PP_0481 0.28 +1.1 564,931 + PP_0481 0.28 +1.2 564,931 + PP_0481 0.28 +2.3 564,932 - PP_0481 0.29 +0.7 564,946 + PP_0481 0.30 -1.3 564,947 - PP_0481 0.30 +0.0 565,112 + PP_0481 0.41 +1.5 565,112 + PP_0481 0.41 +1.0 565,112 + PP_0481 0.41 +0.3 565,112 + PP_0481 0.41 -1.6 565,113 - PP_0481 0.41 +0.7 565,113 - PP_0481 0.41 +1.5 565,220 - PP_0481 0.49 -1.7 565,232 + PP_0481 0.49 +0.2
Or see this region's nucleotide sequence