Strain Fitness in Pseudomonas putida KT2440 around PP_0378

Experiment: 3-methyl-1-butanol 0.25 vol% (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0376 and PP_0377 are separated by 1 nucleotidesPP_0377 and PP_0378 overlap by 4 nucleotidesPP_0378 and PP_0379 are separated by 163 nucleotides PP_0376: PP_0376 - Coenzyme PQQ synthesis protein E, at 456,620 to 457,750 _0376 PP_0377: PP_0377 - coenzyme PQQ synthesis protein D, at 457,752 to 458,027 _0377 PP_0378: PP_0378 - Pyrroloquinoline-quinone synthase, at 458,024 to 458,779 _0378 PP_0379: PP_0379 - Coenzyme PQQ synthesis protein B, at 458,943 to 459,854 _0379 Position (kb) 458 459Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 457.041 kb on + strand, within PP_0376at 457.041 kb on + strand, within PP_0376at 457.042 kb on - strand, within PP_0376at 457.045 kb on - strand, within PP_0376at 457.045 kb on - strand, within PP_0376at 457.117 kb on + strand, within PP_0376at 457.118 kb on - strand, within PP_0376at 457.118 kb on - strand, within PP_0376at 457.161 kb on - strand, within PP_0376at 457.185 kb on + strand, within PP_0376at 457.186 kb on - strand, within PP_0376at 457.186 kb on - strand, within PP_0376at 457.492 kb on - strand, within PP_0376at 457.492 kb on - strand, within PP_0376at 457.494 kb on + strand, within PP_0376at 457.495 kb on - strand, within PP_0376at 457.671 kb on + strandat 457.696 kb on - strandat 457.742 kb on - strandat 457.742 kb on - strandat 457.939 kb on + strand, within PP_0377at 457.973 kb on - strand, within PP_0377at 458.005 kb on - strandat 458.012 kb on + strandat 458.027 kb on + strandat 458.027 kb on + strandat 458.028 kb on - strandat 458.119 kb on + strand, within PP_0378at 458.120 kb on - strand, within PP_0378at 458.161 kb on + strand, within PP_0378at 458.161 kb on + strand, within PP_0378at 458.161 kb on + strand, within PP_0378at 458.162 kb on - strand, within PP_0378at 458.187 kb on + strand, within PP_0378at 458.188 kb on - strand, within PP_0378at 458.188 kb on - strand, within PP_0378at 458.256 kb on + strand, within PP_0378at 458.256 kb on + strand, within PP_0378at 458.257 kb on - strand, within PP_0378at 458.430 kb on - strand, within PP_0378at 458.430 kb on - strand, within PP_0378at 458.430 kb on - strand, within PP_0378at 458.622 kb on + strand, within PP_0378at 458.622 kb on + strand, within PP_0378at 458.623 kb on - strand, within PP_0378at 458.625 kb on + strand, within PP_0378at 458.625 kb on + strand, within PP_0378at 458.626 kb on - strand, within PP_0378at 458.694 kb on + strand, within PP_0378at 458.694 kb on + strand, within PP_0378at 458.695 kb on - strand, within PP_0378at 458.712 kb on + strandat 458.712 kb on + strandat 458.712 kb on + strandat 458.713 kb on - strandat 458.713 kb on - strandat 458.713 kb on - strandat 458.715 kb on + strandat 458.716 kb on - strandat 458.795 kb on - strandat 458.804 kb on - strandat 458.804 kb on - strandat 458.940 kb on + strandat 458.944 kb on + strandat 458.944 kb on + strandat 458.945 kb on - strandat 459.053 kb on + strand, within PP_0379at 459.054 kb on - strand, within PP_0379at 459.054 kb on - strand, within PP_0379at 459.054 kb on - strand, within PP_0379at 459.054 kb on - strand, within PP_0379at 459.057 kb on + strand, within PP_0379at 459.057 kb on + strand, within PP_0379at 459.057 kb on + strand, within PP_0379at 459.058 kb on - strand, within PP_0379at 459.246 kb on + strand, within PP_0379at 459.246 kb on + strand, within PP_0379at 459.246 kb on + strand, within PP_0379at 459.268 kb on + strand, within PP_0379at 459.268 kb on + strand, within PP_0379at 459.352 kb on + strand, within PP_0379at 459.352 kb on + strand, within PP_0379at 459.700 kb on - strand, within PP_0379at 459.700 kb on - strand, within PP_0379

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Per-strain Table

Position Strand Gene LocusTag Fraction 3-methyl-1-butanol 0.25 vol% (C)
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457,041 + PP_0376 0.37 -2.9
457,041 + PP_0376 0.37 -2.8
457,042 - PP_0376 0.37 -2.0
457,045 - PP_0376 0.38 -1.3
457,045 - PP_0376 0.38 -2.5
457,117 + PP_0376 0.44 -0.3
457,118 - PP_0376 0.44 -1.3
457,118 - PP_0376 0.44 -2.7
457,161 - PP_0376 0.48 -0.9
457,185 + PP_0376 0.50 -1.8
457,186 - PP_0376 0.50 -2.4
457,186 - PP_0376 0.50 -2.3
457,492 - PP_0376 0.77 -2.8
457,492 - PP_0376 0.77 -2.9
457,494 + PP_0376 0.77 -2.9
457,495 - PP_0376 0.77 -3.5
457,671 + -2.4
457,696 - -3.9
457,742 - -1.8
457,742 - +0.1
457,939 + PP_0377 0.68 -3.3
457,973 - PP_0377 0.80 -1.9
458,005 - -1.7
458,012 + -2.5
458,027 + -3.9
458,027 + -2.1
458,028 - -0.2
458,119 + PP_0378 0.13 -3.5
458,120 - PP_0378 0.13 -0.4
458,161 + PP_0378 0.18 -2.7
458,161 + PP_0378 0.18 -1.5
458,161 + PP_0378 0.18 -2.5
458,162 - PP_0378 0.18 -2.8
458,187 + PP_0378 0.22 -2.1
458,188 - PP_0378 0.22 -3.0
458,188 - PP_0378 0.22 -2.6
458,256 + PP_0378 0.31 -3.8
458,256 + PP_0378 0.31 -2.5
458,257 - PP_0378 0.31 -3.1
458,430 - PP_0378 0.54 -3.0
458,430 - PP_0378 0.54 -2.1
458,430 - PP_0378 0.54 -2.8
458,622 + PP_0378 0.79 -2.0
458,622 + PP_0378 0.79 -1.8
458,623 - PP_0378 0.79 -2.8
458,625 + PP_0378 0.79 -3.4
458,625 + PP_0378 0.79 -2.0
458,626 - PP_0378 0.80 -3.3
458,694 + PP_0378 0.89 -2.4
458,694 + PP_0378 0.89 -2.1
458,695 - PP_0378 0.89 -2.4
458,712 + -1.6
458,712 + -1.8
458,712 + -1.9
458,713 - -2.5
458,713 - -2.1
458,713 - -3.6
458,715 + -3.1
458,716 - -3.7
458,795 - +0.3
458,804 - +3.2
458,804 - +1.9
458,940 + -0.6
458,944 + -4.9
458,944 + -1.1
458,945 - -0.8
459,053 + PP_0379 0.12 -0.6
459,054 - PP_0379 0.12 +0.9
459,054 - PP_0379 0.12 -3.2
459,054 - PP_0379 0.12 +1.3
459,054 - PP_0379 0.12 -0.1
459,057 + PP_0379 0.12 -0.8
459,057 + PP_0379 0.12 -1.5
459,057 + PP_0379 0.12 -2.3
459,058 - PP_0379 0.13 -0.6
459,246 + PP_0379 0.33 -3.2
459,246 + PP_0379 0.33 -2.5
459,246 + PP_0379 0.33 -2.1
459,268 + PP_0379 0.36 -3.4
459,268 + PP_0379 0.36 -3.6
459,352 + PP_0379 0.45 -0.6
459,352 + PP_0379 0.45 -3.5
459,700 - PP_0379 0.83 -0.5
459,700 - PP_0379 0.83 -0.9

Or see this region's nucleotide sequence