Strain Fitness in Pseudomonas putida KT2440 around PP_0330

Experiment: 3-methyl-1-butanol 0.25 vol% (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0329 and PP_0330 are separated by 193 nucleotidesPP_0330 and PP_0331 are separated by 20 nucleotidesPP_0331 and PP_0332 are separated by 211 nucleotides PP_0329: PP_0329 - conserved protein of unknown function, at 396,022 to 396,945 _0329 PP_0330: PP_0330 - hypothetical protein, at 397,139 to 397,714 _0330 PP_0331: PP_0331 - conserved protein of unknown function, at 397,735 to 398,484 _0331 PP_0332: PP_0332 - putative Acyltransferase, at 398,696 to 399,583 _0332 Position (kb) 397 398Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 396.162 kb on - strand, within PP_0329at 396.242 kb on - strand, within PP_0329at 396.246 kb on - strand, within PP_0329at 396.246 kb on - strand, within PP_0329at 396.448 kb on - strand, within PP_0329at 396.465 kb on + strand, within PP_0329at 396.635 kb on + strand, within PP_0329at 396.635 kb on + strand, within PP_0329at 396.635 kb on + strand, within PP_0329at 396.636 kb on - strand, within PP_0329at 396.636 kb on - strand, within PP_0329at 396.643 kb on + strand, within PP_0329at 396.643 kb on + strand, within PP_0329at 396.643 kb on + strand, within PP_0329at 396.643 kb on + strand, within PP_0329at 396.643 kb on + strand, within PP_0329at 396.644 kb on - strand, within PP_0329at 396.656 kb on - strand, within PP_0329at 396.710 kb on + strand, within PP_0329at 396.725 kb on + strand, within PP_0329at 396.725 kb on + strand, within PP_0329at 396.725 kb on + strand, within PP_0329at 396.726 kb on - strand, within PP_0329at 396.912 kb on - strandat 396.917 kb on + strandat 396.918 kb on - strandat 396.927 kb on + strandat 396.982 kb on + strandat 396.983 kb on - strandat 396.983 kb on - strandat 396.983 kb on - strandat 396.998 kb on + strandat 397.030 kb on + strandat 397.049 kb on + strandat 397.049 kb on + strandat 397.049 kb on + strandat 397.050 kb on - strandat 397.050 kb on - strandat 397.050 kb on - strandat 397.379 kb on - strand, within PP_0330at 397.379 kb on - strand, within PP_0330at 397.379 kb on - strand, within PP_0330at 397.379 kb on - strand, within PP_0330at 397.379 kb on - strand, within PP_0330at 397.392 kb on - strand, within PP_0330at 397.392 kb on - strand, within PP_0330at 397.392 kb on - strand, within PP_0330at 397.444 kb on + strand, within PP_0330at 397.444 kb on + strand, within PP_0330at 397.445 kb on - strand, within PP_0330at 397.454 kb on - strand, within PP_0330at 397.543 kb on + strand, within PP_0330at 397.544 kb on - strand, within PP_0330at 397.544 kb on - strand, within PP_0330at 397.622 kb on + strand, within PP_0330at 397.623 kb on - strand, within PP_0330at 397.623 kb on - strand, within PP_0330at 397.739 kb on - strandat 397.830 kb on - strand, within PP_0331at 397.895 kb on + strand, within PP_0331at 397.896 kb on - strand, within PP_0331at 397.939 kb on - strand, within PP_0331at 397.939 kb on - strand, within PP_0331at 397.940 kb on + strand, within PP_0331at 398.004 kb on - strand, within PP_0331at 398.018 kb on - strand, within PP_0331at 398.099 kb on - strand, within PP_0331at 398.099 kb on - strand, within PP_0331at 398.208 kb on + strand, within PP_0331at 398.244 kb on - strand, within PP_0331at 398.244 kb on - strand, within PP_0331at 398.256 kb on + strandat 398.256 kb on + strand, within PP_0331at 398.259 kb on - strand, within PP_0331at 398.259 kb on - strand, within PP_0331at 398.259 kb on - strand, within PP_0331at 398.321 kb on + strandat 398.321 kb on + strand, within PP_0331at 398.322 kb on - strand, within PP_0331at 398.322 kb on - strand, within PP_0331at 398.348 kb on + strand, within PP_0331at 398.348 kb on + strand, within PP_0331at 398.348 kb on + strand, within PP_0331at 398.348 kb on + strand, within PP_0331at 398.348 kb on + strand, within PP_0331at 398.348 kb on + strand, within PP_0331at 398.348 kb on + strand, within PP_0331at 398.349 kb on - strand, within PP_0331at 398.349 kb on - strand, within PP_0331at 398.349 kb on - strand, within PP_0331at 398.349 kb on - strand, within PP_0331at 398.349 kb on - strand, within PP_0331at 398.392 kb on + strand, within PP_0331at 398.404 kb on - strand, within PP_0331at 398.429 kb on + strandat 398.438 kb on + strandat 398.438 kb on + strandat 398.438 kb on + strandat 398.439 kb on - strandat 398.491 kb on + strandat 398.491 kb on + strandat 398.491 kb on + strandat 398.492 kb on - strandat 398.492 kb on - strandat 398.492 kb on - strandat 398.523 kb on + strandat 398.523 kb on + strandat 398.549 kb on + strandat 398.549 kb on + strandat 398.549 kb on + strandat 398.596 kb on + strandat 398.597 kb on - strandat 398.608 kb on + strandat 398.616 kb on + strandat 398.616 kb on + strandat 398.617 kb on - strandat 398.623 kb on + strandat 398.624 kb on - strandat 398.624 kb on - strandat 398.640 kb on + strandat 398.641 kb on - strandat 398.641 kb on - strandat 398.641 kb on - strandat 398.649 kb on + strandat 398.650 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 3-methyl-1-butanol 0.25 vol% (C)
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396,162 - PP_0329 0.15 -0.8
396,242 - PP_0329 0.24 -1.0
396,246 - PP_0329 0.24 -3.7
396,246 - PP_0329 0.24 -0.6
396,448 - PP_0329 0.46 +2.0
396,465 + PP_0329 0.48 -3.2
396,635 + PP_0329 0.66 -1.0
396,635 + PP_0329 0.66 -0.8
396,635 + PP_0329 0.66 -1.3
396,636 - PP_0329 0.66 +1.7
396,636 - PP_0329 0.66 +0.8
396,643 + PP_0329 0.67 -0.1
396,643 + PP_0329 0.67 -0.8
396,643 + PP_0329 0.67 -2.1
396,643 + PP_0329 0.67 +1.0
396,643 + PP_0329 0.67 +0.8
396,644 - PP_0329 0.67 +1.6
396,656 - PP_0329 0.69 +1.4
396,710 + PP_0329 0.74 -0.1
396,725 + PP_0329 0.76 -0.7
396,725 + PP_0329 0.76 +0.3
396,725 + PP_0329 0.76 +0.5
396,726 - PP_0329 0.76 +0.0
396,912 - -3.6
396,917 + +0.3
396,918 - +0.4
396,927 + -3.2
396,982 + -0.8
396,983 - -1.1
396,983 - +0.6
396,983 - +0.9
396,998 + -3.0
397,030 + +0.1
397,049 + -1.1
397,049 + +1.0
397,049 + -0.9
397,050 - -0.7
397,050 - -2.3
397,050 - -2.1
397,379 - PP_0330 0.42 +2.0
397,379 - PP_0330 0.42 +1.1
397,379 - PP_0330 0.42 -0.4
397,379 - PP_0330 0.42 +1.2
397,379 - PP_0330 0.42 +1.8
397,392 - PP_0330 0.44 +0.1
397,392 - PP_0330 0.44 -3.9
397,392 - PP_0330 0.44 +2.5
397,444 + PP_0330 0.53 -2.0
397,444 + PP_0330 0.53 +1.3
397,445 - PP_0330 0.53 +1.6
397,454 - PP_0330 0.55 +0.3
397,543 + PP_0330 0.70 -3.2
397,544 - PP_0330 0.70 +2.2
397,544 - PP_0330 0.70 +1.7
397,622 + PP_0330 0.84 +0.5
397,623 - PP_0330 0.84 +0.7
397,623 - PP_0330 0.84 -0.4
397,739 - +0.5
397,830 - PP_0331 0.13 -0.8
397,895 + PP_0331 0.21 -2.4
397,896 - PP_0331 0.21 +0.9
397,939 - PP_0331 0.27 +0.4
397,939 - PP_0331 0.27 +1.8
397,940 + PP_0331 0.27 -0.8
398,004 - PP_0331 0.36 +0.4
398,018 - PP_0331 0.38 -0.6
398,099 - PP_0331 0.49 +1.9
398,099 - PP_0331 0.49 +1.0
398,208 + PP_0331 0.63 +0.2
398,244 - PP_0331 0.68 -3.0
398,244 - PP_0331 0.68 +0.9
398,256 + +0.7
398,256 + PP_0331 0.69 +1.0
398,259 - PP_0331 0.70 +0.7
398,259 - PP_0331 0.70 -0.5
398,259 - PP_0331 0.70 +3.7
398,321 + -0.0
398,321 + PP_0331 0.78 -0.2
398,322 - PP_0331 0.78 -3.9
398,322 - PP_0331 0.78 +0.3
398,348 + PP_0331 0.82 +1.2
398,348 + PP_0331 0.82 +0.8
398,348 + PP_0331 0.82 -0.9
398,348 + PP_0331 0.82 +0.8
398,348 + PP_0331 0.82 -0.2
398,348 + PP_0331 0.82 -2.4
398,348 + PP_0331 0.82 +2.7
398,349 - PP_0331 0.82 +0.7
398,349 - PP_0331 0.82 -0.3
398,349 - PP_0331 0.82 +0.7
398,349 - PP_0331 0.82 +2.2
398,349 - PP_0331 0.82 +0.5
398,392 + PP_0331 0.88 -2.4
398,404 - PP_0331 0.89 -0.5
398,429 + -1.4
398,438 + -1.1
398,438 + +1.3
398,438 + +0.0
398,439 - +0.1
398,491 + -0.7
398,491 + -0.6
398,491 + -1.0
398,492 - +0.7
398,492 - -3.4
398,492 - -0.0
398,523 + -0.4
398,523 + -2.7
398,549 + -0.1
398,549 + +1.2
398,549 + -3.3
398,596 + +0.5
398,597 - -0.7
398,608 + -1.6
398,616 + +1.2
398,616 + +0.7
398,617 - -1.4
398,623 + -0.6
398,624 - +0.4
398,624 - +0.7
398,640 + +0.7
398,641 - -0.9
398,641 - -1.2
398,641 - -0.3
398,649 + +0.9
398,650 - -3.6

Or see this region's nucleotide sequence