Strain Fitness in Pseudomonas putida KT2440 around PP_0227

Experiment: 3-methyl-1-butanol 0.25 vol% (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0225 and PP_0226 are separated by 2 nucleotidesPP_0226 and PP_0227 overlap by 4 nucleotidesPP_0227 and PP_0228 are separated by 308 nucleotides PP_0225: PP_0225 - sulfur compound ABC transporter - ATP-binding subunit, at 278,819 to 279,577 _0225 PP_0226: PP_0226 - sulfur compound ABC transporter - permease subunit, at 279,580 to 280,248 _0226 PP_0227: PP_0227 - periplasmic cystine-binding protein, at 280,245 to 281,039 _0227 PP_0228: PP_0228 - putative serine acetyltransferase, at 281,348 to 282,280 _0228 Position (kb) 280 281 282Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 279.385 kb on + strand, within PP_0225at 279.386 kb on - strand, within PP_0225at 279.399 kb on - strand, within PP_0225at 279.399 kb on - strand, within PP_0225at 279.660 kb on - strand, within PP_0226at 279.660 kb on - strand, within PP_0226at 279.660 kb on - strand, within PP_0226at 279.680 kb on + strand, within PP_0226at 279.680 kb on + strand, within PP_0226at 279.680 kb on + strand, within PP_0226at 279.681 kb on - strand, within PP_0226at 279.681 kb on - strand, within PP_0226at 279.681 kb on - strand, within PP_0226at 279.939 kb on + strand, within PP_0226at 279.939 kb on + strand, within PP_0226at 279.940 kb on - strand, within PP_0226at 279.940 kb on - strand, within PP_0226at 279.940 kb on - strand, within PP_0226at 279.941 kb on + strand, within PP_0226at 279.942 kb on - strand, within PP_0226at 279.942 kb on - strand, within PP_0226at 279.942 kb on - strand, within PP_0226at 279.942 kb on - strand, within PP_0226at 279.942 kb on - strand, within PP_0226at 280.022 kb on + strand, within PP_0226at 280.022 kb on + strand, within PP_0226at 280.022 kb on + strand, within PP_0226at 280.022 kb on + strand, within PP_0226at 280.023 kb on - strand, within PP_0226at 280.023 kb on - strand, within PP_0226at 280.023 kb on - strand, within PP_0226at 280.074 kb on - strand, within PP_0226at 280.074 kb on - strand, within PP_0226at 280.074 kb on - strand, within PP_0226at 280.182 kb on + strandat 280.182 kb on + strandat 280.182 kb on + strandat 280.182 kb on + strandat 280.182 kb on + strandat 280.184 kb on + strandat 280.184 kb on + strandat 280.271 kb on - strandat 280.271 kb on - strandat 280.516 kb on + strand, within PP_0227at 280.516 kb on + strand, within PP_0227at 280.516 kb on + strand, within PP_0227at 280.516 kb on + strand, within PP_0227at 280.516 kb on + strand, within PP_0227at 280.516 kb on + strand, within PP_0227at 280.517 kb on - strand, within PP_0227at 280.517 kb on - strand, within PP_0227at 280.517 kb on - strand, within PP_0227at 280.564 kb on + strand, within PP_0227at 280.564 kb on + strand, within PP_0227at 280.565 kb on - strand, within PP_0227at 280.565 kb on - strand, within PP_0227at 280.565 kb on - strand, within PP_0227at 280.581 kb on + strand, within PP_0227at 280.582 kb on - strand, within PP_0227at 280.678 kb on + strand, within PP_0227at 280.678 kb on + strand, within PP_0227at 280.679 kb on - strand, within PP_0227at 280.679 kb on - strand, within PP_0227at 280.679 kb on - strand, within PP_0227at 280.679 kb on - strand, within PP_0227at 280.679 kb on - strand, within PP_0227at 280.679 kb on - strand, within PP_0227at 280.679 kb on - strand, within PP_0227at 280.697 kb on - strand, within PP_0227at 280.697 kb on - strand, within PP_0227at 280.740 kb on + strand, within PP_0227at 280.740 kb on + strand, within PP_0227at 280.740 kb on + strand, within PP_0227at 280.740 kb on + strand, within PP_0227at 280.740 kb on + strand, within PP_0227at 280.741 kb on - strand, within PP_0227at 280.741 kb on - strand, within PP_0227at 280.741 kb on - strand, within PP_0227at 280.741 kb on - strand, within PP_0227at 280.741 kb on - strand, within PP_0227at 280.741 kb on - strand, within PP_0227at 280.741 kb on - strand, within PP_0227at 280.898 kb on - strand, within PP_0227at 280.898 kb on - strand, within PP_0227at 281.063 kb on + strandat 281.063 kb on + strandat 281.063 kb on + strandat 281.063 kb on + strandat 281.064 kb on - strandat 281.064 kb on - strandat 281.064 kb on - strandat 281.068 kb on - strandat 281.068 kb on - strandat 281.082 kb on + strandat 281.083 kb on - strandat 281.083 kb on - strandat 281.083 kb on - strandat 281.084 kb on + strandat 281.084 kb on + strandat 281.085 kb on - strandat 281.085 kb on - strandat 281.085 kb on - strandat 281.085 kb on - strandat 281.085 kb on - strandat 281.085 kb on - strandat 281.085 kb on - strandat 281.126 kb on + strandat 281.204 kb on + strandat 281.215 kb on + strandat 281.215 kb on + strandat 281.329 kb on + strandat 281.329 kb on + strandat 281.447 kb on - strand, within PP_0228at 281.576 kb on + strand, within PP_0228at 281.576 kb on + strand, within PP_0228at 281.576 kb on + strand, within PP_0228at 281.576 kb on + strand, within PP_0228at 281.577 kb on - strand, within PP_0228at 281.587 kb on + strand, within PP_0228at 281.816 kb on + strand, within PP_0228at 281.864 kb on + strand, within PP_0228at 281.865 kb on - strand, within PP_0228at 281.981 kb on - strand, within PP_0228

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Per-strain Table

Position Strand Gene LocusTag Fraction 3-methyl-1-butanol 0.25 vol% (C)
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279,385 + PP_0225 0.75 +1.5
279,386 - PP_0225 0.75 -1.2
279,399 - PP_0225 0.76 -0.8
279,399 - PP_0225 0.76 +1.5
279,660 - PP_0226 0.12 -2.8
279,660 - PP_0226 0.12 +1.5
279,660 - PP_0226 0.12 +1.6
279,680 + PP_0226 0.15 +2.0
279,680 + PP_0226 0.15 +2.0
279,680 + PP_0226 0.15 -4.4
279,681 - PP_0226 0.15 -0.5
279,681 - PP_0226 0.15 -1.5
279,681 - PP_0226 0.15 +0.2
279,939 + PP_0226 0.54 -0.0
279,939 + PP_0226 0.54 -2.0
279,940 - PP_0226 0.54 +0.1
279,940 - PP_0226 0.54 -1.7
279,940 - PP_0226 0.54 +2.3
279,941 + PP_0226 0.54 -3.1
279,942 - PP_0226 0.54 +1.0
279,942 - PP_0226 0.54 +0.6
279,942 - PP_0226 0.54 -0.5
279,942 - PP_0226 0.54 +1.1
279,942 - PP_0226 0.54 -2.1
280,022 + PP_0226 0.66 -4.5
280,022 + PP_0226 0.66 +1.1
280,022 + PP_0226 0.66 -2.3
280,022 + PP_0226 0.66 -1.7
280,023 - PP_0226 0.66 -2.0
280,023 - PP_0226 0.66 +0.7
280,023 - PP_0226 0.66 +0.6
280,074 - PP_0226 0.74 -1.4
280,074 - PP_0226 0.74 -0.3
280,074 - PP_0226 0.74 -1.8
280,182 + -1.1
280,182 + +0.3
280,182 + +1.2
280,182 + -0.3
280,182 + -0.2
280,184 + -1.0
280,184 + +0.3
280,271 - -0.6
280,271 - +1.3
280,516 + PP_0227 0.34 -0.1
280,516 + PP_0227 0.34 +0.6
280,516 + PP_0227 0.34 -3.6
280,516 + PP_0227 0.34 -0.8
280,516 + PP_0227 0.34 -0.3
280,516 + PP_0227 0.34 +1.1
280,517 - PP_0227 0.34 -1.2
280,517 - PP_0227 0.34 -2.4
280,517 - PP_0227 0.34 -0.5
280,564 + PP_0227 0.40 -0.9
280,564 + PP_0227 0.40 -0.3
280,565 - PP_0227 0.40 -1.7
280,565 - PP_0227 0.40 -0.9
280,565 - PP_0227 0.40 -3.3
280,581 + PP_0227 0.42 -3.6
280,582 - PP_0227 0.42 -0.3
280,678 + PP_0227 0.54 -1.4
280,678 + PP_0227 0.54 -0.2
280,679 - PP_0227 0.55 +0.2
280,679 - PP_0227 0.55 -0.3
280,679 - PP_0227 0.55 +1.0
280,679 - PP_0227 0.55 -3.4
280,679 - PP_0227 0.55 -3.5
280,679 - PP_0227 0.55 +1.7
280,679 - PP_0227 0.55 -1.5
280,697 - PP_0227 0.57 -0.9
280,697 - PP_0227 0.57 -3.0
280,740 + PP_0227 0.62 +1.1
280,740 + PP_0227 0.62 -0.0
280,740 + PP_0227 0.62 -2.3
280,740 + PP_0227 0.62 +0.5
280,740 + PP_0227 0.62 -1.4
280,741 - PP_0227 0.62 -1.0
280,741 - PP_0227 0.62 -0.6
280,741 - PP_0227 0.62 -1.4
280,741 - PP_0227 0.62 -2.2
280,741 - PP_0227 0.62 +1.7
280,741 - PP_0227 0.62 +1.2
280,741 - PP_0227 0.62 +0.5
280,898 - PP_0227 0.82 -0.3
280,898 - PP_0227 0.82 +0.6
281,063 + +0.4
281,063 + +0.2
281,063 + -2.4
281,063 + -0.5
281,064 - -0.7
281,064 - -1.3
281,064 - -0.3
281,068 - -3.7
281,068 - -0.9
281,082 + +0.1
281,083 - -3.9
281,083 - +0.9
281,083 - -0.1
281,084 + -4.4
281,084 + +1.1
281,085 - +2.7
281,085 - +2.0
281,085 - -1.4
281,085 - -0.2
281,085 - -1.3
281,085 - +2.4
281,085 - -0.8
281,126 + -3.4
281,204 + -1.6
281,215 + +1.0
281,215 + +1.1
281,329 + -3.8
281,329 + +0.3
281,447 - PP_0228 0.11 -2.9
281,576 + PP_0228 0.24 -0.2
281,576 + PP_0228 0.24 -0.7
281,576 + PP_0228 0.24 -1.0
281,576 + PP_0228 0.24 +1.6
281,577 - PP_0228 0.25 +0.4
281,587 + PP_0228 0.26 +0.6
281,816 + PP_0228 0.50 +1.2
281,864 + PP_0228 0.55 +1.2
281,865 - PP_0228 0.55 +0.5
281,981 - PP_0228 0.68 -1.9

Or see this region's nucleotide sequence