Strain Fitness in Pseudomonas putida KT2440 around PP_0112

Experiment: 3-methyl-1-butanol 0.25 vol% (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPP_0110 and PP_0111 overlap by 4 nucleotidesPP_0111 and PP_0112 are separated by 93 nucleotidesPP_0112 and PP_0113 are separated by 64 nucleotidesPP_0113 and PP_0114 overlap by 1 nucleotides PP_0110: PP_0110 - CyoE like protoheme IX farnesyltransferase, at 115,698 to 116,591 _0110 PP_0111: PP_0111 - Electron transport protein SCO1/SenC, at 116,588 to 117,220 _0111 PP_0112: PP_0112 - methionine ABC transporter, periplasmic binding protein, at 117,314 to 118,084 _0112 PP_0113: PP_0113 - methionine ABC transporter, permease protein, at 118,149 to 118,820 _0113 PP_0114: PP_0114 - methionine ABC transporter ATP-binding protein, at 118,820 to 119,827 _0114 Position (kb) 117 118 119Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 116.348 kb on + strand, within PP_0110at 116.348 kb on + strand, within PP_0110at 116.348 kb on + strand, within PP_0110at 116.358 kb on + strand, within PP_0110at 116.359 kb on - strand, within PP_0110at 116.359 kb on - strand, within PP_0110at 116.395 kb on - strand, within PP_0110at 116.395 kb on - strand, within PP_0110at 116.438 kb on - strand, within PP_0110at 116.478 kb on + strand, within PP_0110at 116.478 kb on + strand, within PP_0110at 116.479 kb on - strand, within PP_0110at 116.479 kb on - strand, within PP_0110at 116.479 kb on - strand, within PP_0110at 116.479 kb on - strand, within PP_0110at 116.483 kb on + strand, within PP_0110at 116.484 kb on - strand, within PP_0110at 116.520 kb on + strandat 116.521 kb on - strandat 116.525 kb on + strandat 116.526 kb on - strandat 116.532 kb on + strandat 116.532 kb on + strandat 116.533 kb on - strandat 116.571 kb on + strandat 116.572 kb on - strandat 116.572 kb on - strandat 116.587 kb on + strandat 116.588 kb on - strandat 116.588 kb on - strandat 116.588 kb on - strandat 116.588 kb on - strandat 116.668 kb on + strand, within PP_0111at 116.668 kb on + strand, within PP_0111at 116.668 kb on + strand, within PP_0111at 116.668 kb on + strand, within PP_0111at 116.668 kb on + strand, within PP_0111at 116.668 kb on + strand, within PP_0111at 116.828 kb on + strand, within PP_0111at 116.828 kb on + strand, within PP_0111at 116.828 kb on + strand, within PP_0111at 116.829 kb on - strand, within PP_0111at 116.829 kb on - strand, within PP_0111at 116.834 kb on + strand, within PP_0111at 116.834 kb on + strand, within PP_0111at 116.835 kb on - strand, within PP_0111at 116.835 kb on - strand, within PP_0111at 116.835 kb on - strand, within PP_0111at 116.835 kb on - strand, within PP_0111at 116.835 kb on - strand, within PP_0111at 116.835 kb on - strand, within PP_0111at 116.835 kb on - strand, within PP_0111at 116.945 kb on - strand, within PP_0111at 116.975 kb on + strand, within PP_0111at 116.975 kb on + strand, within PP_0111at 116.975 kb on + strand, within PP_0111at 116.975 kb on + strand, within PP_0111at 116.985 kb on - strand, within PP_0111at 117.093 kb on - strand, within PP_0111at 117.094 kb on + strand, within PP_0111at 117.095 kb on - strand, within PP_0111at 117.237 kb on - strandat 117.237 kb on - strandat 117.256 kb on + strandat 117.256 kb on + strandat 117.257 kb on - strandat 117.257 kb on - strandat 117.257 kb on - strandat 117.295 kb on + strandat 117.305 kb on + strandat 117.305 kb on + strandat 117.306 kb on - strandat 117.343 kb on - strandat 117.450 kb on + strand, within PP_0112at 117.451 kb on - strand, within PP_0112at 117.451 kb on - strand, within PP_0112at 117.516 kb on + strand, within PP_0112at 117.517 kb on - strand, within PP_0112at 117.517 kb on - strand, within PP_0112at 117.542 kb on + strand, within PP_0112at 117.542 kb on + strand, within PP_0112at 117.542 kb on + strand, within PP_0112at 117.543 kb on - strand, within PP_0112at 117.774 kb on + strand, within PP_0112at 117.774 kb on + strand, within PP_0112at 117.775 kb on - strand, within PP_0112at 117.775 kb on - strand, within PP_0112at 117.775 kb on - strand, within PP_0112at 117.852 kb on + strand, within PP_0112at 117.853 kb on - strand, within PP_0112at 117.918 kb on + strand, within PP_0112at 117.919 kb on - strand, within PP_0112at 117.919 kb on - strand, within PP_0112at 117.947 kb on + strand, within PP_0112at 118.022 kb on - strandat 118.150 kb on + strandat 118.150 kb on + strandat 118.151 kb on - strandat 118.151 kb on - strandat 118.154 kb on + strandat 118.209 kb on + strandat 118.209 kb on + strandat 118.221 kb on + strand, within PP_0113at 118.221 kb on + strand, within PP_0113at 118.221 kb on + strand, within PP_0113at 118.233 kb on + strand, within PP_0113at 118.234 kb on - strand, within PP_0113at 118.324 kb on + strand, within PP_0113at 118.354 kb on - strand, within PP_0113at 118.512 kb on + strand, within PP_0113at 118.551 kb on - strand, within PP_0113at 118.645 kb on + strand, within PP_0113at 118.645 kb on + strand, within PP_0113at 118.645 kb on + strand, within PP_0113at 118.646 kb on - strand, within PP_0113at 118.646 kb on - strand, within PP_0113at 118.716 kb on + strand, within PP_0113at 118.716 kb on + strand, within PP_0113at 118.837 kb on + strandat 118.837 kb on + strandat 118.837 kb on + strandat 118.837 kb on + strandat 118.837 kb on + strandat 118.837 kb on + strandat 118.837 kb on + strandat 118.837 kb on + strandat 118.838 kb on - strandat 118.838 kb on - strandat 118.838 kb on - strandat 118.838 kb on - strandat 118.838 kb on - strandat 118.838 kb on - strandat 118.838 kb on - strandat 118.841 kb on + strandat 118.841 kb on + strandat 118.841 kb on + strandat 118.841 kb on + strandat 118.842 kb on - strandat 118.842 kb on - strandat 118.842 kb on - strandat 118.842 kb on - strandat 118.842 kb on - strandat 118.939 kb on + strand, within PP_0114at 118.959 kb on + strand, within PP_0114at 118.959 kb on + strand, within PP_0114at 118.959 kb on + strand, within PP_0114at 118.960 kb on - strand, within PP_0114at 118.960 kb on - strand, within PP_0114at 119.004 kb on + strand, within PP_0114at 119.004 kb on + strand, within PP_0114at 119.004 kb on + strand, within PP_0114at 119.005 kb on - strand, within PP_0114at 119.005 kb on - strand, within PP_0114at 119.005 kb on - strand, within PP_0114at 119.005 kb on - strand, within PP_0114at 119.033 kb on + strand, within PP_0114

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 3-methyl-1-butanol 0.25 vol% (C)
remove
116,348 + PP_0110 0.73 -0.2
116,348 + PP_0110 0.73 +3.1
116,348 + PP_0110 0.73 -0.4
116,358 + PP_0110 0.74 -2.8
116,359 - PP_0110 0.74 +1.7
116,359 - PP_0110 0.74 +0.5
116,395 - PP_0110 0.78 +1.0
116,395 - PP_0110 0.78 +0.4
116,438 - PP_0110 0.83 +0.2
116,478 + PP_0110 0.87 -1.8
116,478 + PP_0110 0.87 +1.3
116,479 - PP_0110 0.87 -2.7
116,479 - PP_0110 0.87 +0.8
116,479 - PP_0110 0.87 +0.4
116,479 - PP_0110 0.87 -0.3
116,483 + PP_0110 0.88 -0.1
116,484 - PP_0110 0.88 -0.2
116,520 + +0.3
116,521 - +0.8
116,525 + +1.8
116,526 - +0.5
116,532 + -1.8
116,532 + +1.4
116,533 - +1.2
116,571 + +1.7
116,572 - -0.3
116,572 - -2.3
116,587 + +0.5
116,588 - -1.0
116,588 - -2.6
116,588 - +0.7
116,588 - -1.4
116,668 + PP_0111 0.13 +0.0
116,668 + PP_0111 0.13 +0.5
116,668 + PP_0111 0.13 -0.9
116,668 + PP_0111 0.13 -2.2
116,668 + PP_0111 0.13 -0.8
116,668 + PP_0111 0.13 -0.9
116,828 + PP_0111 0.38 -0.3
116,828 + PP_0111 0.38 -1.6
116,828 + PP_0111 0.38 -0.4
116,829 - PP_0111 0.38 -0.7
116,829 - PP_0111 0.38 +2.2
116,834 + PP_0111 0.39 -0.4
116,834 + PP_0111 0.39 +1.4
116,835 - PP_0111 0.39 -4.3
116,835 - PP_0111 0.39 +1.1
116,835 - PP_0111 0.39 -1.4
116,835 - PP_0111 0.39 -1.1
116,835 - PP_0111 0.39 -3.1
116,835 - PP_0111 0.39 +1.6
116,835 - PP_0111 0.39 -2.6
116,945 - PP_0111 0.56 -1.1
116,975 + PP_0111 0.61 -0.9
116,975 + PP_0111 0.61 -2.6
116,975 + PP_0111 0.61 +0.0
116,975 + PP_0111 0.61 +0.8
116,985 - PP_0111 0.63 -1.3
117,093 - PP_0111 0.80 -2.0
117,094 + PP_0111 0.80 -0.2
117,095 - PP_0111 0.80 -3.4
117,237 - -1.7
117,237 - +0.4
117,256 + +0.8
117,256 + -0.1
117,257 - -0.7
117,257 - -1.2
117,257 - +0.6
117,295 + -1.0
117,305 + -0.2
117,305 + +1.4
117,306 - +1.4
117,343 - -0.4
117,450 + PP_0112 0.18 -1.6
117,451 - PP_0112 0.18 -1.1
117,451 - PP_0112 0.18 +1.0
117,516 + PP_0112 0.26 -0.8
117,517 - PP_0112 0.26 -1.6
117,517 - PP_0112 0.26 -3.1
117,542 + PP_0112 0.30 -1.6
117,542 + PP_0112 0.30 -3.8
117,542 + PP_0112 0.30 -0.4
117,543 - PP_0112 0.30 -0.8
117,774 + PP_0112 0.60 -0.8
117,774 + PP_0112 0.60 +1.7
117,775 - PP_0112 0.60 -1.2
117,775 - PP_0112 0.60 -1.5
117,775 - PP_0112 0.60 -1.2
117,852 + PP_0112 0.70 +1.2
117,853 - PP_0112 0.70 -1.3
117,918 + PP_0112 0.78 -1.1
117,919 - PP_0112 0.78 -0.2
117,919 - PP_0112 0.78 +1.2
117,947 + PP_0112 0.82 +0.5
118,022 - +1.0
118,150 + -4.1
118,150 + -1.4
118,151 - -2.5
118,151 - +0.2
118,154 + -0.6
118,209 + -3.3
118,209 + -0.3
118,221 + PP_0113 0.11 -0.1
118,221 + PP_0113 0.11 -0.3
118,221 + PP_0113 0.11 -3.5
118,233 + PP_0113 0.12 +2.2
118,234 - PP_0113 0.13 +1.1
118,324 + PP_0113 0.26 -0.8
118,354 - PP_0113 0.31 +0.2
118,512 + PP_0113 0.54 +1.5
118,551 - PP_0113 0.60 -3.3
118,645 + PP_0113 0.74 +0.4
118,645 + PP_0113 0.74 +0.9
118,645 + PP_0113 0.74 +0.7
118,646 - PP_0113 0.74 -0.6
118,646 - PP_0113 0.74 +0.5
118,716 + PP_0113 0.84 +0.4
118,716 + PP_0113 0.84 -2.9
118,837 + +0.3
118,837 + -0.5
118,837 + +1.1
118,837 + +1.3
118,837 + +1.3
118,837 + -0.4
118,837 + +0.4
118,837 + -3.5
118,838 - -1.6
118,838 - +0.3
118,838 - +0.2
118,838 - -3.0
118,838 - +1.6
118,838 - +1.9
118,838 - -1.7
118,841 + +0.2
118,841 + -3.9
118,841 + -0.1
118,841 + -1.3
118,842 - -0.6
118,842 - -3.0
118,842 - -3.2
118,842 - -0.6
118,842 - -2.0
118,939 + PP_0114 0.12 -3.3
118,959 + PP_0114 0.14 +1.2
118,959 + PP_0114 0.14 -2.9
118,959 + PP_0114 0.14 -3.6
118,960 - PP_0114 0.14 -0.0
118,960 - PP_0114 0.14 -0.3
119,004 + PP_0114 0.18 -1.1
119,004 + PP_0114 0.18 -1.2
119,004 + PP_0114 0.18 -0.4
119,005 - PP_0114 0.18 -0.5
119,005 - PP_0114 0.18 -1.4
119,005 - PP_0114 0.18 -1.8
119,005 - PP_0114 0.18 -1.8
119,033 + PP_0114 0.21 -2.2

Or see this region's nucleotide sequence