Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_3967

Experiment: KB with 4-acetoxyphenol 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3966 and Psyr_3967 are separated by 62 nucleotidesPsyr_3967 and Psyr_3968 are separated by 1 nucleotides Psyr_3966: Psyr_3966 - Uncharacterized protein UPF0065, at 4,713,938 to 4,714,915 _3966 Psyr_3967: Psyr_3967 - membrane protein TctB, putative, at 4,714,978 to 4,715,436 _3967 Psyr_3968: Psyr_3968 - Protein of unknown function DUF112, at 4,715,438 to 4,716,952 _3968 Position (kb) 4714 4715 4716Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 4714.130 kb on + strand, within Psyr_3966at 4714.130 kb on + strand, within Psyr_3966at 4714.130 kb on + strand, within Psyr_3966at 4714.130 kb on + strand, within Psyr_3966at 4714.130 kb on + strand, within Psyr_3966at 4714.130 kb on + strand, within Psyr_3966at 4714.130 kb on + strand, within Psyr_3966at 4714.130 kb on + strand, within Psyr_3966at 4714.130 kb on + strand, within Psyr_3966at 4714.131 kb on - strand, within Psyr_3966at 4714.131 kb on - strand, within Psyr_3966at 4714.131 kb on - strand, within Psyr_3966at 4714.131 kb on - strand, within Psyr_3966at 4714.131 kb on - strand, within Psyr_3966at 4714.160 kb on + strand, within Psyr_3966at 4714.160 kb on + strand, within Psyr_3966at 4714.161 kb on - strand, within Psyr_3966at 4714.304 kb on + strand, within Psyr_3966at 4714.337 kb on + strand, within Psyr_3966at 4714.337 kb on + strand, within Psyr_3966at 4714.628 kb on - strand, within Psyr_3966at 4714.695 kb on + strand, within Psyr_3966at 4714.709 kb on + strand, within Psyr_3966at 4714.709 kb on + strand, within Psyr_3966at 4714.739 kb on + strand, within Psyr_3966at 4714.739 kb on + strand, within Psyr_3966at 4714.739 kb on + strand, within Psyr_3966at 4714.739 kb on + strand, within Psyr_3966at 4714.739 kb on + strand, within Psyr_3966at 4714.739 kb on + strand, within Psyr_3966at 4714.740 kb on - strand, within Psyr_3966at 4714.853 kb on + strandat 4714.853 kb on + strandat 4714.853 kb on + strandat 4714.853 kb on + strandat 4714.853 kb on + strandat 4714.853 kb on + strandat 4714.853 kb on + strandat 4714.854 kb on - strandat 4714.854 kb on - strandat 4714.854 kb on - strandat 4714.985 kb on + strandat 4714.985 kb on + strandat 4714.985 kb on + strandat 4714.985 kb on + strandat 4714.985 kb on + strandat 4714.985 kb on + strandat 4714.985 kb on + strandat 4714.985 kb on + strandat 4714.985 kb on + strandat 4714.985 kb on + strandat 4714.986 kb on - strandat 4714.986 kb on - strandat 4715.024 kb on + strand, within Psyr_3967at 4715.024 kb on + strand, within Psyr_3967at 4715.025 kb on - strand, within Psyr_3967at 4715.068 kb on + strand, within Psyr_3967at 4715.135 kb on - strand, within Psyr_3967at 4715.135 kb on - strand, within Psyr_3967at 4715.135 kb on - strand, within Psyr_3967at 4715.135 kb on - strand, within Psyr_3967at 4715.312 kb on - strand, within Psyr_3967at 4715.369 kb on - strand, within Psyr_3967at 4715.434 kb on + strandat 4715.443 kb on + strandat 4715.444 kb on - strandat 4715.489 kb on + strandat 4715.528 kb on - strandat 4715.661 kb on - strand, within Psyr_3968at 4715.882 kb on + strand, within Psyr_3968at 4715.882 kb on + strand, within Psyr_3968at 4715.882 kb on + strand, within Psyr_3968at 4715.882 kb on + strand, within Psyr_3968at 4715.883 kb on - strand, within Psyr_3968at 4716.036 kb on + strand, within Psyr_3968at 4716.036 kb on + strand, within Psyr_3968at 4716.036 kb on + strand, within Psyr_3968at 4716.036 kb on + strand, within Psyr_3968at 4716.036 kb on + strand, within Psyr_3968at 4716.036 kb on + strand, within Psyr_3968at 4716.036 kb on + strand, within Psyr_3968at 4716.036 kb on + strand, within Psyr_3968at 4716.036 kb on + strand, within Psyr_3968at 4716.036 kb on + strand, within Psyr_3968at 4716.036 kb on + strand, within Psyr_3968at 4716.036 kb on + strand, within Psyr_3968at 4716.036 kb on + strand, within Psyr_3968at 4716.036 kb on + strand, within Psyr_3968at 4716.036 kb on + strand, within Psyr_3968at 4716.036 kb on + strand, within Psyr_3968at 4716.036 kb on + strand, within Psyr_3968at 4716.036 kb on + strand, within Psyr_3968at 4716.037 kb on - strand, within Psyr_3968at 4716.037 kb on - strand, within Psyr_3968at 4716.037 kb on - strand, within Psyr_3968at 4716.037 kb on - strand, within Psyr_3968at 4716.037 kb on - strand, within Psyr_3968at 4716.037 kb on - strand, within Psyr_3968at 4716.037 kb on - strand, within Psyr_3968at 4716.037 kb on - strand, within Psyr_3968at 4716.037 kb on - strand, within Psyr_3968at 4716.037 kb on - strand, within Psyr_3968at 4716.037 kb on - strand, within Psyr_3968at 4716.037 kb on - strand, within Psyr_3968at 4716.037 kb on - strand, within Psyr_3968at 4716.037 kb on - strand, within Psyr_3968at 4716.203 kb on - strand, within Psyr_3968at 4716.203 kb on - strand, within Psyr_3968at 4716.278 kb on + strand, within Psyr_3968at 4716.278 kb on + strand, within Psyr_3968at 4716.278 kb on + strand, within Psyr_3968at 4716.278 kb on + strand, within Psyr_3968at 4716.278 kb on + strand, within Psyr_3968at 4716.278 kb on + strand, within Psyr_3968at 4716.279 kb on - strand, within Psyr_3968at 4716.279 kb on - strand, within Psyr_3968at 4716.279 kb on - strand, within Psyr_3968at 4716.279 kb on - strand, within Psyr_3968at 4716.279 kb on - strand, within Psyr_3968at 4716.279 kb on - strand, within Psyr_3968at 4716.279 kb on - strand, within Psyr_3968

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with 4-acetoxyphenol 10 mM
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4,714,130 + Psyr_3966 0.20 +2.7
4,714,130 + Psyr_3966 0.20 +0.3
4,714,130 + Psyr_3966 0.20 -2.6
4,714,130 + Psyr_3966 0.20 +0.0
4,714,130 + Psyr_3966 0.20 -0.8
4,714,130 + Psyr_3966 0.20 +1.8
4,714,130 + Psyr_3966 0.20 +0.0
4,714,130 + Psyr_3966 0.20 -0.7
4,714,130 + Psyr_3966 0.20 +0.7
4,714,131 - Psyr_3966 0.20 -0.9
4,714,131 - Psyr_3966 0.20 +0.4
4,714,131 - Psyr_3966 0.20 -0.1
4,714,131 - Psyr_3966 0.20 +1.2
4,714,131 - Psyr_3966 0.20 +1.7
4,714,160 + Psyr_3966 0.23 +0.1
4,714,160 + Psyr_3966 0.23 +2.2
4,714,161 - Psyr_3966 0.23 +1.0
4,714,304 + Psyr_3966 0.37 +0.1
4,714,337 + Psyr_3966 0.41 -0.7
4,714,337 + Psyr_3966 0.41 +2.8
4,714,628 - Psyr_3966 0.71 +0.8
4,714,695 + Psyr_3966 0.77 +0.2
4,714,709 + Psyr_3966 0.79 +1.0
4,714,709 + Psyr_3966 0.79 -0.6
4,714,739 + Psyr_3966 0.82 +2.2
4,714,739 + Psyr_3966 0.82 -0.0
4,714,739 + Psyr_3966 0.82 -2.7
4,714,739 + Psyr_3966 0.82 -0.5
4,714,739 + Psyr_3966 0.82 -0.8
4,714,739 + Psyr_3966 0.82 +0.7
4,714,740 - Psyr_3966 0.82 +0.7
4,714,853 + +1.8
4,714,853 + -0.5
4,714,853 + -0.8
4,714,853 + +0.5
4,714,853 + +0.3
4,714,853 + -0.5
4,714,853 + +0.5
4,714,854 - +2.2
4,714,854 - +0.4
4,714,854 - +0.3
4,714,985 + -2.3
4,714,985 + +0.5
4,714,985 + +0.2
4,714,985 + +1.0
4,714,985 + -1.1
4,714,985 + +0.2
4,714,985 + +0.1
4,714,985 + +0.4
4,714,985 + +2.2
4,714,985 + +3.5
4,714,986 - -0.2
4,714,986 - -1.6
4,715,024 + Psyr_3967 0.10 +0.7
4,715,024 + Psyr_3967 0.10 -0.4
4,715,025 - Psyr_3967 0.10 +1.7
4,715,068 + Psyr_3967 0.20 +3.2
4,715,135 - Psyr_3967 0.34 -1.1
4,715,135 - Psyr_3967 0.34 -0.9
4,715,135 - Psyr_3967 0.34 +1.3
4,715,135 - Psyr_3967 0.34 +1.9
4,715,312 - Psyr_3967 0.73 -0.5
4,715,369 - Psyr_3967 0.85 -0.9
4,715,434 + -1.4
4,715,443 + -1.3
4,715,444 - +0.7
4,715,489 + +0.8
4,715,528 - -0.3
4,715,661 - Psyr_3968 0.15 -0.5
4,715,882 + Psyr_3968 0.29 -0.5
4,715,882 + Psyr_3968 0.29 +0.4
4,715,882 + Psyr_3968 0.29 +0.6
4,715,882 + Psyr_3968 0.29 +0.9
4,715,883 - Psyr_3968 0.29 +0.1
4,716,036 + Psyr_3968 0.39 +2.8
4,716,036 + Psyr_3968 0.39 +0.7
4,716,036 + Psyr_3968 0.39 +2.1
4,716,036 + Psyr_3968 0.39 +3.2
4,716,036 + Psyr_3968 0.39 +1.2
4,716,036 + Psyr_3968 0.39 -1.2
4,716,036 + Psyr_3968 0.39 +0.5
4,716,036 + Psyr_3968 0.39 +0.8
4,716,036 + Psyr_3968 0.39 +0.6
4,716,036 + Psyr_3968 0.39 +0.4
4,716,036 + Psyr_3968 0.39 -1.9
4,716,036 + Psyr_3968 0.39 -0.8
4,716,036 + Psyr_3968 0.39 +1.3
4,716,036 + Psyr_3968 0.39 +1.1
4,716,036 + Psyr_3968 0.39 +0.4
4,716,036 + Psyr_3968 0.39 +1.1
4,716,036 + Psyr_3968 0.39 +0.0
4,716,036 + Psyr_3968 0.39 +1.6
4,716,037 - Psyr_3968 0.40 -0.2
4,716,037 - Psyr_3968 0.40 -1.6
4,716,037 - Psyr_3968 0.40 +1.2
4,716,037 - Psyr_3968 0.40 +0.5
4,716,037 - Psyr_3968 0.40 +0.6
4,716,037 - Psyr_3968 0.40 -0.8
4,716,037 - Psyr_3968 0.40 -1.4
4,716,037 - Psyr_3968 0.40 -1.4
4,716,037 - Psyr_3968 0.40 -0.7
4,716,037 - Psyr_3968 0.40 -2.1
4,716,037 - Psyr_3968 0.40 +0.9
4,716,037 - Psyr_3968 0.40 +3.8
4,716,037 - Psyr_3968 0.40 -2.3
4,716,037 - Psyr_3968 0.40 -1.0
4,716,203 - Psyr_3968 0.50 +0.3
4,716,203 - Psyr_3968 0.50 -0.0
4,716,278 + Psyr_3968 0.55 +1.5
4,716,278 + Psyr_3968 0.55 -0.1
4,716,278 + Psyr_3968 0.55 +1.2
4,716,278 + Psyr_3968 0.55 -0.0
4,716,278 + Psyr_3968 0.55 -0.6
4,716,278 + Psyr_3968 0.55 -1.1
4,716,279 - Psyr_3968 0.56 +0.9
4,716,279 - Psyr_3968 0.56 +1.2
4,716,279 - Psyr_3968 0.56 -0.4
4,716,279 - Psyr_3968 0.56 -0.6
4,716,279 - Psyr_3968 0.56 -1.0
4,716,279 - Psyr_3968 0.56 +0.4
4,716,279 - Psyr_3968 0.56 +0.5

Or see this region's nucleotide sequence