Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_1616

Experiment: KB with 4-acetoxyphenol 10 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsyr_1615 and Psyr_1616 are separated by 41 nucleotidesPsyr_1616 and Psyr_1617 overlap by 17 nucleotidesPsyr_1617 and Psyr_1618 overlap by 1 nucleotides Psyr_1615: Psyr_1615 - Patatin, at 1,817,714 to 1,818,898 _1615 Psyr_1616: Psyr_1616 - Rieske [2Fe-2S] region, at 1,818,940 to 1,819,176 _1616 Psyr_1617: Psyr_1617 - conserved hypothetical protein, at 1,819,160 to 1,820,017 _1617 Psyr_1618: Psyr_1618 - Dihydrodipicolinate synthetase, at 1,820,017 to 1,820,814 _1618 Position (kb) 1818 1819 1820Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1817.997 kb on + strand, within Psyr_1615at 1818.259 kb on - strand, within Psyr_1615at 1818.259 kb on - strand, within Psyr_1615at 1818.362 kb on + strand, within Psyr_1615at 1818.362 kb on + strand, within Psyr_1615at 1818.363 kb on - strand, within Psyr_1615at 1818.363 kb on - strand, within Psyr_1615at 1818.363 kb on - strand, within Psyr_1615at 1818.417 kb on + strand, within Psyr_1615at 1818.417 kb on + strand, within Psyr_1615at 1818.470 kb on - strand, within Psyr_1615at 1818.562 kb on + strand, within Psyr_1615at 1818.794 kb on + strandat 1818.794 kb on + strandat 1818.794 kb on + strandat 1818.794 kb on + strandat 1818.795 kb on - strandat 1818.795 kb on - strandat 1818.941 kb on + strandat 1818.941 kb on + strandat 1818.942 kb on - strandat 1819.112 kb on + strand, within Psyr_1616at 1819.132 kb on + strand, within Psyr_1616at 1819.374 kb on + strand, within Psyr_1617at 1819.374 kb on + strand, within Psyr_1617at 1819.374 kb on + strand, within Psyr_1617at 1819.375 kb on - strand, within Psyr_1617at 1819.375 kb on - strand, within Psyr_1617at 1819.377 kb on + strand, within Psyr_1617at 1819.377 kb on + strand, within Psyr_1617at 1819.377 kb on + strand, within Psyr_1617at 1819.377 kb on + strand, within Psyr_1617at 1819.378 kb on - strand, within Psyr_1617at 1819.378 kb on - strand, within Psyr_1617at 1819.378 kb on - strand, within Psyr_1617at 1819.378 kb on - strand, within Psyr_1617at 1819.419 kb on + strand, within Psyr_1617at 1819.420 kb on - strand, within Psyr_1617at 1819.420 kb on - strand, within Psyr_1617at 1819.455 kb on + strand, within Psyr_1617at 1819.455 kb on + strand, within Psyr_1617at 1819.455 kb on + strand, within Psyr_1617at 1819.455 kb on + strand, within Psyr_1617at 1819.456 kb on - strand, within Psyr_1617at 1819.456 kb on - strand, within Psyr_1617at 1819.516 kb on + strand, within Psyr_1617at 1819.516 kb on + strand, within Psyr_1617at 1819.516 kb on + strand, within Psyr_1617at 1819.516 kb on + strand, within Psyr_1617at 1819.516 kb on + strand, within Psyr_1617at 1819.517 kb on - strand, within Psyr_1617at 1819.517 kb on - strand, within Psyr_1617at 1819.517 kb on - strand, within Psyr_1617at 1819.554 kb on - strand, within Psyr_1617at 1819.558 kb on - strand, within Psyr_1617at 1819.605 kb on + strand, within Psyr_1617at 1819.615 kb on + strand, within Psyr_1617at 1819.710 kb on + strand, within Psyr_1617at 1819.710 kb on + strand, within Psyr_1617at 1819.710 kb on + strand, within Psyr_1617at 1819.711 kb on - strand, within Psyr_1617at 1819.711 kb on - strand, within Psyr_1617at 1819.797 kb on + strand, within Psyr_1617at 1819.797 kb on + strand, within Psyr_1617at 1819.797 kb on + strand, within Psyr_1617at 1819.798 kb on - strand, within Psyr_1617at 1819.798 kb on - strand, within Psyr_1617at 1819.798 kb on - strand, within Psyr_1617at 1819.798 kb on - strand, within Psyr_1617at 1819.798 kb on - strand, within Psyr_1617at 1819.798 kb on - strand, within Psyr_1617at 1819.798 kb on - strand, within Psyr_1617at 1820.116 kb on - strand, within Psyr_1618at 1820.117 kb on + strand, within Psyr_1618

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction KB with 4-acetoxyphenol 10 mM
remove
1,817,997 + Psyr_1615 0.24 -0.9
1,818,259 - Psyr_1615 0.46 +1.3
1,818,259 - Psyr_1615 0.46 +2.9
1,818,362 + Psyr_1615 0.55 -1.8
1,818,362 + Psyr_1615 0.55 -0.1
1,818,363 - Psyr_1615 0.55 +0.0
1,818,363 - Psyr_1615 0.55 -1.1
1,818,363 - Psyr_1615 0.55 -0.0
1,818,417 + Psyr_1615 0.59 -0.7
1,818,417 + Psyr_1615 0.59 -1.3
1,818,470 - Psyr_1615 0.64 +0.2
1,818,562 + Psyr_1615 0.72 +1.9
1,818,794 + +1.0
1,818,794 + +0.2
1,818,794 + -0.3
1,818,794 + +0.2
1,818,795 - -0.5
1,818,795 - -1.5
1,818,941 + +1.6
1,818,941 + +0.4
1,818,942 - +1.0
1,819,112 + Psyr_1616 0.73 +0.4
1,819,132 + Psyr_1616 0.81 +0.7
1,819,374 + Psyr_1617 0.25 -1.9
1,819,374 + Psyr_1617 0.25 +0.4
1,819,374 + Psyr_1617 0.25 +0.6
1,819,375 - Psyr_1617 0.25 +1.3
1,819,375 - Psyr_1617 0.25 -0.8
1,819,377 + Psyr_1617 0.25 +0.4
1,819,377 + Psyr_1617 0.25 -0.2
1,819,377 + Psyr_1617 0.25 -1.2
1,819,377 + Psyr_1617 0.25 -0.9
1,819,378 - Psyr_1617 0.25 -1.1
1,819,378 - Psyr_1617 0.25 -0.6
1,819,378 - Psyr_1617 0.25 +0.1
1,819,378 - Psyr_1617 0.25 +1.2
1,819,419 + Psyr_1617 0.30 +0.8
1,819,420 - Psyr_1617 0.30 -0.8
1,819,420 - Psyr_1617 0.30 +0.6
1,819,455 + Psyr_1617 0.34 +1.2
1,819,455 + Psyr_1617 0.34 +2.7
1,819,455 + Psyr_1617 0.34 +0.1
1,819,455 + Psyr_1617 0.34 +1.3
1,819,456 - Psyr_1617 0.34 -0.8
1,819,456 - Psyr_1617 0.34 +1.1
1,819,516 + Psyr_1617 0.41 -0.7
1,819,516 + Psyr_1617 0.41 -0.3
1,819,516 + Psyr_1617 0.41 -0.6
1,819,516 + Psyr_1617 0.41 -0.6
1,819,516 + Psyr_1617 0.41 +1.6
1,819,517 - Psyr_1617 0.42 -0.3
1,819,517 - Psyr_1617 0.42 +0.8
1,819,517 - Psyr_1617 0.42 +1.6
1,819,554 - Psyr_1617 0.46 -2.3
1,819,558 - Psyr_1617 0.46 -1.3
1,819,605 + Psyr_1617 0.52 -2.1
1,819,615 + Psyr_1617 0.53 -0.8
1,819,710 + Psyr_1617 0.64 +0.5
1,819,710 + Psyr_1617 0.64 +0.5
1,819,710 + Psyr_1617 0.64 +0.3
1,819,711 - Psyr_1617 0.64 -1.1
1,819,711 - Psyr_1617 0.64 +0.3
1,819,797 + Psyr_1617 0.74 -0.7
1,819,797 + Psyr_1617 0.74 -0.0
1,819,797 + Psyr_1617 0.74 +2.5
1,819,798 - Psyr_1617 0.74 +2.3
1,819,798 - Psyr_1617 0.74 +0.3
1,819,798 - Psyr_1617 0.74 +2.3
1,819,798 - Psyr_1617 0.74 -1.1
1,819,798 - Psyr_1617 0.74 -0.9
1,819,798 - Psyr_1617 0.74 -0.8
1,819,798 - Psyr_1617 0.74 -0.1
1,820,116 - Psyr_1618 0.12 -0.1
1,820,117 + Psyr_1618 0.13 +3.3

Or see this region's nucleotide sequence