Experiment: KB with 4-acetoxyphenol 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_1025 and Psyr_1026 are separated by 213 nucleotides Psyr_1026 and Psyr_1027 are separated by 229 nucleotides
Psyr_1025: Psyr_1025 - Short-chain dehydrogenase/reductase SDR, at 1,155,606 to 1,156,517
_1025
Psyr_1026: Psyr_1026 - hypothetical protein, at 1,156,731 to 1,157,288
_1026
Psyr_1027: Psyr_1027 - conserved hypothetical protein, at 1,157,518 to 1,158,321
_1027
Position (kb) 1156
1157
1158 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 1155.963 kb on + strand, within Psyr_1025 at 1155.987 kb on + strand, within Psyr_1025 at 1155.987 kb on + strand, within Psyr_1025 at 1155.987 kb on + strand, within Psyr_1025 at 1155.987 kb on + strand, within Psyr_1025 at 1155.987 kb on + strand, within Psyr_1025 at 1155.987 kb on + strand, within Psyr_1025 at 1155.987 kb on + strand, within Psyr_1025 at 1155.987 kb on + strand, within Psyr_1025 at 1155.988 kb on - strand, within Psyr_1025 at 1155.988 kb on - strand, within Psyr_1025 at 1155.988 kb on - strand, within Psyr_1025 at 1155.990 kb on - strand, within Psyr_1025 at 1155.990 kb on - strand, within Psyr_1025 at 1155.990 kb on - strand, within Psyr_1025 at 1155.990 kb on - strand, within Psyr_1025 at 1156.068 kb on - strand, within Psyr_1025 at 1156.071 kb on + strand, within Psyr_1025 at 1156.071 kb on + strand, within Psyr_1025 at 1156.072 kb on - strand, within Psyr_1025 at 1156.096 kb on - strand, within Psyr_1025 at 1156.096 kb on - strand, within Psyr_1025 at 1156.275 kb on + strand, within Psyr_1025 at 1156.275 kb on + strand, within Psyr_1025 at 1156.275 kb on + strand, within Psyr_1025 at 1156.275 kb on + strand, within Psyr_1025 at 1156.275 kb on + strand, within Psyr_1025 at 1156.275 kb on + strand, within Psyr_1025 at 1156.276 kb on - strand, within Psyr_1025 at 1156.506 kb on + strand at 1156.506 kb on + strand at 1156.506 kb on + strand at 1156.506 kb on + strand at 1156.506 kb on + strand at 1156.507 kb on - strand at 1156.507 kb on - strand at 1156.515 kb on + strand at 1156.515 kb on + strand at 1156.571 kb on + strand at 1156.592 kb on + strand at 1156.592 kb on + strand at 1156.592 kb on + strand at 1156.593 kb on - strand at 1156.593 kb on - strand at 1156.593 kb on - strand at 1156.593 kb on - strand at 1156.593 kb on - strand at 1156.593 kb on - strand at 1156.593 kb on - strand at 1156.593 kb on - strand at 1156.616 kb on + strand at 1156.616 kb on + strand at 1156.616 kb on + strand at 1156.616 kb on + strand at 1156.616 kb on + strand at 1156.616 kb on + strand at 1156.616 kb on + strand at 1156.617 kb on - strand at 1156.617 kb on - strand at 1156.617 kb on - strand at 1156.617 kb on - strand at 1156.620 kb on + strand at 1156.620 kb on + strand at 1156.620 kb on + strand at 1156.620 kb on + strand at 1156.620 kb on + strand at 1156.620 kb on + strand at 1156.620 kb on + strand at 1156.620 kb on + strand at 1156.620 kb on + strand at 1156.621 kb on - strand at 1156.621 kb on - strand at 1156.621 kb on - strand at 1156.621 kb on - strand at 1156.621 kb on - strand at 1156.621 kb on - strand at 1156.621 kb on - strand at 1156.621 kb on - strand at 1156.621 kb on - strand at 1156.621 kb on - strand at 1156.621 kb on - strand at 1156.621 kb on - strand at 1156.621 kb on - strand at 1156.621 kb on - strand at 1156.621 kb on - strand at 1156.642 kb on + strand at 1156.643 kb on - strand at 1156.669 kb on + strand at 1156.669 kb on + strand at 1156.670 kb on - strand at 1156.670 kb on - strand at 1156.716 kb on + strand at 1156.717 kb on - strand at 1156.717 kb on - strand at 1156.717 kb on - strand at 1156.717 kb on - strand at 1156.927 kb on + strand, within Psyr_1026 at 1156.928 kb on - strand, within Psyr_1026 at 1156.928 kb on - strand, within Psyr_1026 at 1156.928 kb on - strand, within Psyr_1026 at 1156.928 kb on - strand, within Psyr_1026 at 1156.966 kb on - strand, within Psyr_1026 at 1156.966 kb on - strand, within Psyr_1026 at 1156.966 kb on - strand, within Psyr_1026 at 1156.986 kb on - strand, within Psyr_1026 at 1157.133 kb on + strand, within Psyr_1026 at 1157.134 kb on - strand, within Psyr_1026 at 1157.157 kb on + strand, within Psyr_1026 at 1157.157 kb on + strand, within Psyr_1026 at 1157.157 kb on + strand, within Psyr_1026 at 1157.157 kb on + strand, within Psyr_1026 at 1157.158 kb on - strand, within Psyr_1026 at 1157.158 kb on - strand, within Psyr_1026 at 1157.158 kb on - strand, within Psyr_1026 at 1157.158 kb on - strand, within Psyr_1026 at 1157.158 kb on - strand, within Psyr_1026 at 1157.174 kb on + strand, within Psyr_1026 at 1157.336 kb on - strand at 1157.489 kb on + strand at 1157.651 kb on + strand, within Psyr_1027 at 1157.652 kb on - strand, within Psyr_1027 at 1157.814 kb on + strand, within Psyr_1027 at 1157.814 kb on + strand, within Psyr_1027 at 1157.814 kb on + strand, within Psyr_1027 at 1157.814 kb on + strand, within Psyr_1027 at 1157.814 kb on + strand, within Psyr_1027 at 1157.814 kb on + strand, within Psyr_1027 at 1157.814 kb on + strand, within Psyr_1027 at 1157.814 kb on + strand, within Psyr_1027 at 1157.814 kb on + strand, within Psyr_1027 at 1157.814 kb on + strand, within Psyr_1027 at 1157.814 kb on + strand, within Psyr_1027 at 1157.814 kb on + strand, within Psyr_1027 at 1157.815 kb on - strand, within Psyr_1027 at 1158.176 kb on - strand, within Psyr_1027
Per-strain Table
Position Strand Gene LocusTag Fraction KB with 4-acetoxyphenol 10 mM remove 1,155,963 + Psyr_1025 0.39 -1.1 1,155,987 + Psyr_1025 0.42 -0.7 1,155,987 + Psyr_1025 0.42 +0.0 1,155,987 + Psyr_1025 0.42 +0.0 1,155,987 + Psyr_1025 0.42 +0.4 1,155,987 + Psyr_1025 0.42 +0.9 1,155,987 + Psyr_1025 0.42 +0.9 1,155,987 + Psyr_1025 0.42 +1.1 1,155,987 + Psyr_1025 0.42 -0.4 1,155,988 - Psyr_1025 0.42 -4.1 1,155,988 - Psyr_1025 0.42 +1.4 1,155,988 - Psyr_1025 0.42 +2.6 1,155,990 - Psyr_1025 0.42 -0.3 1,155,990 - Psyr_1025 0.42 -2.0 1,155,990 - Psyr_1025 0.42 -1.3 1,155,990 - Psyr_1025 0.42 +1.3 1,156,068 - Psyr_1025 0.51 +2.3 1,156,071 + Psyr_1025 0.51 +3.3 1,156,071 + Psyr_1025 0.51 +0.4 1,156,072 - Psyr_1025 0.51 +0.1 1,156,096 - Psyr_1025 0.54 -2.2 1,156,096 - Psyr_1025 0.54 +1.3 1,156,275 + Psyr_1025 0.73 +0.8 1,156,275 + Psyr_1025 0.73 -0.1 1,156,275 + Psyr_1025 0.73 +1.4 1,156,275 + Psyr_1025 0.73 -0.3 1,156,275 + Psyr_1025 0.73 -0.1 1,156,275 + Psyr_1025 0.73 -0.5 1,156,276 - Psyr_1025 0.73 +1.3 1,156,506 + -2.5 1,156,506 + -0.5 1,156,506 + -1.1 1,156,506 + -0.1 1,156,506 + -2.3 1,156,507 - +1.0 1,156,507 - +0.5 1,156,515 + +1.9 1,156,515 + -0.8 1,156,571 + -1.1 1,156,592 + +1.0 1,156,592 + +0.3 1,156,592 + -1.0 1,156,593 - +0.1 1,156,593 - -1.5 1,156,593 - -0.3 1,156,593 - +0.4 1,156,593 - -0.4 1,156,593 - +0.3 1,156,593 - +0.3 1,156,593 - -0.5 1,156,616 + +0.9 1,156,616 + -0.5 1,156,616 + -1.3 1,156,616 + +0.5 1,156,616 + -2.1 1,156,616 + -0.2 1,156,616 + -1.9 1,156,617 - -0.5 1,156,617 - -1.0 1,156,617 - +1.6 1,156,617 - -1.1 1,156,620 + -1.0 1,156,620 + -1.1 1,156,620 + +0.3 1,156,620 + +1.3 1,156,620 + +3.3 1,156,620 + -1.0 1,156,620 + +1.3 1,156,620 + +0.6 1,156,620 + +0.6 1,156,621 - -0.6 1,156,621 - +0.5 1,156,621 - +2.1 1,156,621 - +0.8 1,156,621 - +0.0 1,156,621 - +2.3 1,156,621 - +0.6 1,156,621 - -0.5 1,156,621 - -0.4 1,156,621 - +1.8 1,156,621 - +2.1 1,156,621 - +1.9 1,156,621 - +0.5 1,156,621 - -0.7 1,156,621 - +0.3 1,156,642 + -1.3 1,156,643 - +0.3 1,156,669 + -1.5 1,156,669 + -0.9 1,156,670 - +0.7 1,156,670 - +1.8 1,156,716 + +2.4 1,156,717 - -2.0 1,156,717 - -0.1 1,156,717 - +2.3 1,156,717 - -1.7 1,156,927 + Psyr_1026 0.35 +0.3 1,156,928 - Psyr_1026 0.35 -1.0 1,156,928 - Psyr_1026 0.35 -1.1 1,156,928 - Psyr_1026 0.35 -0.1 1,156,928 - Psyr_1026 0.35 -0.1 1,156,966 - Psyr_1026 0.42 +2.0 1,156,966 - Psyr_1026 0.42 +0.0 1,156,966 - Psyr_1026 0.42 +1.7 1,156,986 - Psyr_1026 0.46 +0.6 1,157,133 + Psyr_1026 0.72 +0.7 1,157,134 - Psyr_1026 0.72 +0.4 1,157,157 + Psyr_1026 0.76 +0.6 1,157,157 + Psyr_1026 0.76 +0.3 1,157,157 + Psyr_1026 0.76 +0.5 1,157,157 + Psyr_1026 0.76 -1.1 1,157,158 - Psyr_1026 0.77 +2.6 1,157,158 - Psyr_1026 0.77 +0.5 1,157,158 - Psyr_1026 0.77 -1.3 1,157,158 - Psyr_1026 0.77 +0.5 1,157,158 - Psyr_1026 0.77 -0.1 1,157,174 + Psyr_1026 0.79 +0.3 1,157,336 - +1.3 1,157,489 + +3.3 1,157,651 + Psyr_1027 0.17 -0.4 1,157,652 - Psyr_1027 0.17 +0.2 1,157,814 + Psyr_1027 0.37 -0.2 1,157,814 + Psyr_1027 0.37 +1.9 1,157,814 + Psyr_1027 0.37 +0.6 1,157,814 + Psyr_1027 0.37 -2.1 1,157,814 + Psyr_1027 0.37 +0.8 1,157,814 + Psyr_1027 0.37 +1.1 1,157,814 + Psyr_1027 0.37 +0.8 1,157,814 + Psyr_1027 0.37 -0.7 1,157,814 + Psyr_1027 0.37 +0.6 1,157,814 + Psyr_1027 0.37 +0.9 1,157,814 + Psyr_1027 0.37 -0.9 1,157,814 + Psyr_1027 0.37 -1.5 1,157,815 - Psyr_1027 0.37 +1.6 1,158,176 - Psyr_1027 0.82 -0.9
Or see this region's nucleotide sequence