Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_0864

Experiment: KB with 4-acetoxyphenol 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0862 and Psyr_0863 are separated by 227 nucleotidesPsyr_0863 and Psyr_0864 are separated by 108 nucleotidesPsyr_0864 and Psyr_0865 are separated by 267 nucleotides Psyr_0862: Psyr_0862 - Acyltransferase 3, at 981,424 to 983,445 _0862 Psyr_0863: Psyr_0863 - PhnA protein, at 983,673 to 984,047 _0863 Psyr_0864: Psyr_0864 - Protein of unknown function DUF393, at 984,156 to 984,587 _0864 Psyr_0865: Psyr_0865 - General substrate transporter:Major facilitator superfamily, at 984,855 to 986,063 _0865 Position (kb) 984 985Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 983.257 kb on + strandat 983.257 kb on + strandat 983.257 kb on + strandat 983.258 kb on - strandat 983.258 kb on - strandat 983.258 kb on - strandat 983.258 kb on - strandat 983.258 kb on - strandat 983.258 kb on - strandat 983.463 kb on + strandat 983.463 kb on + strandat 983.463 kb on + strandat 983.463 kb on + strandat 983.463 kb on + strandat 983.464 kb on - strandat 983.464 kb on - strandat 983.464 kb on - strandat 983.464 kb on - strandat 983.481 kb on - strandat 983.497 kb on - strandat 983.497 kb on - strandat 983.497 kb on - strandat 983.497 kb on - strandat 983.497 kb on - strandat 983.501 kb on - strandat 983.529 kb on + strandat 983.530 kb on - strandat 983.530 kb on - strandat 983.577 kb on + strandat 983.577 kb on + strandat 983.578 kb on - strandat 983.578 kb on - strandat 983.666 kb on - strandat 983.666 kb on - strandat 983.667 kb on + strandat 983.667 kb on + strandat 983.667 kb on + strandat 983.667 kb on + strandat 983.667 kb on + strandat 983.668 kb on - strandat 983.668 kb on - strandat 983.680 kb on + strandat 983.742 kb on + strand, within Psyr_0863at 983.748 kb on + strand, within Psyr_0863at 983.748 kb on + strand, within Psyr_0863at 983.748 kb on + strand, within Psyr_0863at 983.748 kb on + strand, within Psyr_0863at 983.748 kb on + strand, within Psyr_0863at 983.748 kb on + strand, within Psyr_0863at 983.749 kb on - strand, within Psyr_0863at 983.749 kb on - strand, within Psyr_0863at 983.749 kb on - strand, within Psyr_0863at 983.749 kb on - strand, within Psyr_0863at 984.067 kb on + strandat 984.178 kb on - strandat 984.353 kb on + strand, within Psyr_0864at 984.354 kb on - strand, within Psyr_0864at 984.489 kb on + strand, within Psyr_0864at 984.490 kb on - strand, within Psyr_0864at 984.490 kb on - strand, within Psyr_0864at 984.490 kb on - strand, within Psyr_0864at 984.490 kb on - strand, within Psyr_0864at 984.605 kb on + strandat 984.606 kb on - strandat 984.652 kb on + strandat 984.692 kb on + strandat 984.781 kb on + strandat 984.781 kb on + strandat 984.782 kb on - strandat 984.860 kb on - strandat 984.935 kb on + strandat 984.969 kb on - strandat 984.969 kb on - strandat 985.026 kb on + strand, within Psyr_0865at 985.026 kb on + strand, within Psyr_0865at 985.026 kb on + strand, within Psyr_0865at 985.026 kb on + strand, within Psyr_0865at 985.027 kb on - strand, within Psyr_0865at 985.027 kb on - strand, within Psyr_0865at 985.027 kb on - strand, within Psyr_0865at 985.027 kb on - strand, within Psyr_0865at 985.027 kb on - strand, within Psyr_0865at 985.027 kb on - strand, within Psyr_0865at 985.027 kb on - strand, within Psyr_0865at 985.310 kb on - strand, within Psyr_0865at 985.396 kb on + strand, within Psyr_0865at 985.501 kb on - strand, within Psyr_0865at 985.501 kb on - strand, within Psyr_0865at 985.501 kb on - strand, within Psyr_0865at 985.501 kb on - strand, within Psyr_0865at 985.542 kb on + strand, within Psyr_0865at 985.542 kb on + strand, within Psyr_0865at 985.543 kb on - strand, within Psyr_0865at 985.548 kb on + strand, within Psyr_0865at 985.548 kb on + strand, within Psyr_0865at 985.548 kb on + strand, within Psyr_0865at 985.548 kb on + strand, within Psyr_0865at 985.548 kb on + strand, within Psyr_0865at 985.548 kb on + strand, within Psyr_0865at 985.549 kb on - strand, within Psyr_0865at 985.549 kb on - strand, within Psyr_0865at 985.549 kb on - strand, within Psyr_0865at 985.549 kb on - strand, within Psyr_0865at 985.549 kb on - strand, within Psyr_0865at 985.549 kb on - strand, within Psyr_0865at 985.549 kb on - strand, within Psyr_0865at 985.549 kb on - strand, within Psyr_0865at 985.549 kb on - strand, within Psyr_0865at 985.549 kb on - strand, within Psyr_0865at 985.549 kb on - strand, within Psyr_0865at 985.549 kb on - strand, within Psyr_0865at 985.549 kb on - strand, within Psyr_0865at 985.549 kb on - strand, within Psyr_0865at 985.549 kb on - strand, within Psyr_0865

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with 4-acetoxyphenol 10 mM
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983,257 + -0.9
983,257 + +0.5
983,257 + +1.2
983,258 - -1.1
983,258 - +2.1
983,258 - -1.3
983,258 - -1.2
983,258 - +0.6
983,258 - +0.3
983,463 + -0.7
983,463 + +2.9
983,463 + -1.7
983,463 + +0.4
983,463 + +0.2
983,464 - -0.7
983,464 - +0.0
983,464 - +0.7
983,464 - -1.5
983,481 - +0.8
983,497 - -0.7
983,497 - -0.4
983,497 - -0.1
983,497 - -0.4
983,497 - -0.3
983,501 - -0.1
983,529 + -0.8
983,530 - -1.0
983,530 - +0.2
983,577 + -0.8
983,577 + +0.9
983,578 - -0.2
983,578 - -0.1
983,666 - +0.6
983,666 - +0.6
983,667 + -0.4
983,667 + +0.5
983,667 + -1.3
983,667 + -2.0
983,667 + -0.1
983,668 - -0.7
983,668 - -0.5
983,680 + -0.5
983,742 + Psyr_0863 0.18 +0.3
983,748 + Psyr_0863 0.20 +0.7
983,748 + Psyr_0863 0.20 -2.7
983,748 + Psyr_0863 0.20 +0.8
983,748 + Psyr_0863 0.20 +1.4
983,748 + Psyr_0863 0.20 -2.9
983,748 + Psyr_0863 0.20 +3.2
983,749 - Psyr_0863 0.20 +0.3
983,749 - Psyr_0863 0.20 +0.2
983,749 - Psyr_0863 0.20 +1.1
983,749 - Psyr_0863 0.20 -1.1
984,067 + +0.3
984,178 - -1.3
984,353 + Psyr_0864 0.46 +1.1
984,354 - Psyr_0864 0.46 +1.0
984,489 + Psyr_0864 0.77 +0.6
984,490 - Psyr_0864 0.77 +0.0
984,490 - Psyr_0864 0.77 -0.6
984,490 - Psyr_0864 0.77 +1.3
984,490 - Psyr_0864 0.77 +0.1
984,605 + -1.6
984,606 - -2.0
984,652 + -1.2
984,692 + +0.2
984,781 + -0.6
984,781 + +0.2
984,782 - +0.9
984,860 - -0.1
984,935 + -1.3
984,969 - -0.5
984,969 - +0.7
985,026 + Psyr_0865 0.14 -1.6
985,026 + Psyr_0865 0.14 -1.6
985,026 + Psyr_0865 0.14 -0.7
985,026 + Psyr_0865 0.14 -0.9
985,027 - Psyr_0865 0.14 +0.4
985,027 - Psyr_0865 0.14 -2.7
985,027 - Psyr_0865 0.14 +3.3
985,027 - Psyr_0865 0.14 -1.7
985,027 - Psyr_0865 0.14 -0.2
985,027 - Psyr_0865 0.14 +1.2
985,027 - Psyr_0865 0.14 +0.9
985,310 - Psyr_0865 0.38 +0.7
985,396 + Psyr_0865 0.45 -0.6
985,501 - Psyr_0865 0.53 +0.3
985,501 - Psyr_0865 0.53 +0.4
985,501 - Psyr_0865 0.53 -1.4
985,501 - Psyr_0865 0.53 -2.3
985,542 + Psyr_0865 0.57 +1.6
985,542 + Psyr_0865 0.57 -0.8
985,543 - Psyr_0865 0.57 -2.0
985,548 + Psyr_0865 0.57 +0.2
985,548 + Psyr_0865 0.57 -0.4
985,548 + Psyr_0865 0.57 +0.3
985,548 + Psyr_0865 0.57 -1.9
985,548 + Psyr_0865 0.57 -2.4
985,548 + Psyr_0865 0.57 -1.0
985,549 - Psyr_0865 0.57 +2.1
985,549 - Psyr_0865 0.57 +1.3
985,549 - Psyr_0865 0.57 +1.6
985,549 - Psyr_0865 0.57 -0.3
985,549 - Psyr_0865 0.57 -0.4
985,549 - Psyr_0865 0.57 +0.5
985,549 - Psyr_0865 0.57 +0.3
985,549 - Psyr_0865 0.57 -0.6
985,549 - Psyr_0865 0.57 +3.9
985,549 - Psyr_0865 0.57 -0.2
985,549 - Psyr_0865 0.57 +0.0
985,549 - Psyr_0865 0.57 -1.6
985,549 - Psyr_0865 0.57 -1.4
985,549 - Psyr_0865 0.57 +2.1
985,549 - Psyr_0865 0.57 +1.8

Or see this region's nucleotide sequence