Strain Fitness in Pseudomonas putida KT2440 around PP_5721

Experiment: 3-methyl-1-butanol 0.1 vol% (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-1-butanol 0.1 vol% (C)
5,933,180	+		PP_5200	0.83	-0.3
5,933,181	-		PP_5200	0.84	-1.2
5,933,375	+				-0.2
5,933,376	-				+0.3
5,933,409	+				+2.3
5,933,409	+				+1.6
5,933,410	-				+1.6
5,933,410	-				-1.6
5,933,502	-		PP_5201	0.14	-1.4
5,933,502	-		PP_5201	0.14	-1.5
5,933,519	+		PP_5201	0.17	+2.0
5,933,519	+		PP_5201	0.17	-1.2
5,933,955	-				+0.8
5,933,967	+				+0.7
5,933,985	-				+2.2
5,934,023	+				+2.0
5,934,023	+				+0.0
5,934,024	-				-2.1
5,934,024	-				+0.6
5,934,024	-				+0.2
5,934,029	-				-1.5
5,934,029	-				+3.2
5,934,198	+		PP_5721	0.35	+0.4
5,934,198	+		PP_5721	0.35	-0.7
5,934,199	-		PP_5721	0.35	-0.0
5,934,219	+		PP_5721	0.44	+0.8
5,934,219	+		PP_5721	0.44	-1.0
5,934,219	+		PP_5721	0.44	-0.4
5,934,220	-		PP_5721	0.45	-1.8
5,934,220	-		PP_5721	0.45	+0.5
5,934,220	-		PP_5721	0.45	+2.3
5,934,220	-		PP_5721	0.45	+0.5
5,934,220	-		PP_5721	0.45	+0.3
5,934,220	-		PP_5721	0.45	-0.5
5,934,223	-		PP_5721	0.46	+1.3
5,934,223	-		PP_5721	0.46	-1.2
5,934,223	-		PP_5721	0.46	-0.4
5,934,223	-		PP_5721	0.46	+0.7
5,934,223	-		PP_5721	0.46	+0.9
5,934,309	+		PP_5721	0.85	-2.4
5,934,351	+				+1.4
5,934,351	+				-1.3
5,934,352	-				+1.9
5,934,522	+		PP_5202	0.58	-2.4
5,934,523	-		PP_5202	0.58	+1.1
5,934,619	-		PP_5202	0.88	+0.3
5,934,642	+				+0.7
5,934,665	-				+0.6
5,934,702	+				+0.2
5,934,703	-				-1.0
5,934,703	-				-0.5
5,934,826	-				-1.9
5,934,842	+				-1.4
5,934,903	+				-0.1
5,934,903	+				+1.3
5,934,904	-				-1.4
5,934,904	-				+0.0
5,934,917	-				-1.3
5,934,946	+				+0.2
5,935,014	+				-1.3
5,935,014	+				-2.1
5,935,015	-				-2.6
5,935,048	+		PP_5203	0.11	-3.2
5,935,085	+		PP_5203	0.17	+1.0
5,935,140	-		PP_5203	0.26	-2.1
5,935,211	+		PP_5203	0.38	-1.7
5,935,211	+		PP_5203	0.38	+0.5
5,935,212	-		PP_5203	0.38	-1.2
5,935,212	-		PP_5203	0.38	-2.1
5,935,300	+		PP_5203	0.53	-2.8