Strain Fitness in Pseudomonas putida KT2440 around PP_5659

Experiment: 3-methyl-1-butanol 0.1 vol% (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-1-butanol 0.1 vol% (C)
4,652,185	-				+0.9
4,652,185	-				+0.1
4,652,205	-				-0.1
4,652,610	+				-0.8
4,652,647	+		PP_4115	0.52	+0.2
4,652,648	-		PP_4115	0.52	+0.7
4,652,725	-		PP_4115	0.62	+0.8
4,652,775	+		PP_4115	0.68	+0.7
4,652,775	+		PP_4115	0.68	+0.6
4,652,775	+		PP_4115	0.68	-0.6
4,652,775	+		PP_4115	0.68	-1.4
4,652,775	+				+2.1
4,652,775	+		PP_4115	0.68	-3.3
4,652,819	-		PP_4115	0.73	+0.9
4,652,973	+				-0.1
4,652,973	+				-2.1
4,652,973	+				-0.6
4,652,974	-				+0.2
4,652,974	-				+0.9
4,652,974	-				-0.4
4,652,974	-				+1.8
4,653,089	+				-3.1
4,653,090	-				-0.1
4,653,102	+				+1.9
4,653,103	-				-0.4
4,653,103	-				+0.1
4,653,103	-				+0.5
4,653,103	-				-0.4
4,653,103	-				+2.6
4,653,103	-				+0.4
4,653,105	+				+0.6
4,653,241	+		PP_5659	0.24	-5.1
4,653,242	-		PP_5659	0.25	-2.8
4,653,243	+		PP_5659	0.25	-3.7
4,653,243	+		PP_5659	0.25	-4.5
4,653,244	-		PP_5659	0.25	-3.4
4,653,490	+				-1.1
4,653,603	+				-5.1
4,653,607	+				-5.1
4,653,607	+				-1.5
4,653,608	-				-1.8
4,653,779	+		PP_4116	0.19	-4.4
4,653,779	+		PP_4116	0.19	-1.2
4,653,779	+		PP_4116	0.19	-2.7
4,653,780	-		PP_4116	0.19	-4.7
4,653,811	+		PP_4116	0.22	-3.8
4,653,811	+		PP_4116	0.22	-4.0
4,653,811	+		PP_4116	0.22	-3.4
4,653,811	+		PP_4116	0.22	-2.5
4,653,811	+		PP_4116	0.22	-3.4
4,653,811	+		PP_4116	0.22	-4.3
4,653,812	-		PP_4116	0.22	-3.4
4,653,812	-		PP_4116	0.22	-1.5
4,653,812	-		PP_4116	0.22	-3.3
4,653,812	-				-1.5
4,653,812	-		PP_4116	0.22	-3.7
4,653,812	-		PP_4116	0.22	-3.7
4,653,862	+		PP_4116	0.26	-4.8
4,653,862	+		PP_4116	0.26	-4.6
4,653,880	+		PP_4116	0.27	-3.9
4,653,985	+		PP_4116	0.35	-3.4
4,653,985	+		PP_4116	0.35	-1.1
4,654,051	+		PP_4116	0.40	-4.5
4,654,052	-		PP_4116	0.40	-3.4
4,654,221	-		PP_4116	0.53	-4.6
4,654,333	+		PP_4116	0.61	-3.1
4,654,333	+		PP_4116	0.61	-2.2
4,654,333	+		PP_4116	0.61	-3.4
4,654,334	-		PP_4116	0.61	-4.7
4,654,334	-		PP_4116	0.61	-5.0
4,654,471	+		PP_4116	0.71	-3.9
4,654,492	+		PP_4116	0.73	-3.9
4,654,492	+		PP_4116	0.73	-3.7