Strain Fitness in Pseudomonas putida KT2440 around PP_5479

Experiment: 3-methyl-1-butanol 0.1 vol% (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-1-butanol 0.1 vol% (C)
2,074,798	+		PP_1850	0.51	-1.1
2,074,799	-		PP_1850	0.51	-0.2
2,074,842	+		PP_1850	0.55	-0.9
2,074,856	+		PP_1850	0.56	+0.1
2,074,885	+		PP_1850	0.58	-0.4
2,074,885	+		PP_1850	0.58	+0.3
2,074,885	+		PP_1850	0.58	+0.4
2,074,885	+		PP_1850	0.58	+0.1
2,074,885	+		PP_1850	0.58	-1.6
2,074,886	-		PP_1850	0.59	-3.6
2,074,886	-		PP_1850	0.59	+0.3
2,074,886	-		PP_1850	0.59	-2.1
2,074,886	-		PP_1850	0.59	-1.0
2,074,886	-		PP_1850	0.59	+0.0
2,074,889	+		PP_1850	0.59	-1.2
2,074,890	-		PP_1850	0.59	-0.9
2,074,890	-		PP_1850	0.59	-0.2
2,074,890	-		PP_1850	0.59	+1.0
2,074,931	+		PP_1850	0.62	+0.9
2,074,932	-		PP_1850	0.62	-0.2
2,074,932	-		PP_1850	0.62	-0.3
2,075,147	+		PP_1850	0.80	-0.4
2,075,147	+		PP_1850	0.80	-0.1
2,075,209	+		PP_1850	0.86	-0.0
2,075,299	+				+1.1
2,075,300	-				-0.4
2,075,302	+				-1.6
2,075,303	-				+0.4
2,075,303	-				-0.2
2,075,405	+				-0.6
2,075,422	-				+1.6
2,075,507	-				+2.4
2,075,581	-		PP_5479	0.11	+1.6
2,075,581	-		PP_5479	0.11	+1.4
2,075,648	+		PP_5479	0.19	+0.7
2,075,891	+		PP_5479	0.46	-0.7
2,075,942	+		PP_5479	0.52	+0.3
2,075,942	+		PP_5479	0.52	+1.0
2,075,942	+		PP_5479	0.52	+0.9
2,075,943	-		PP_5479	0.52	+1.4
2,076,242	+		PP_5479	0.86	+0.9
2,076,283	+				+0.3
2,076,284	-				+0.7
2,076,284	-				+1.9
2,076,284	-				+1.1
2,076,284	-				-0.3
2,076,284	-				+0.1
2,076,361	+				+0.7
2,076,362	-				+1.5
2,076,362	-				-0.9
2,076,362	-				+1.9
2,076,362	-				+0.2
2,076,367	+				-1.4
2,076,430	+				+1.3
2,076,430	+				-1.0
2,076,430	+				+0.1
2,076,430	+				-1.7
2,076,430	+				-0.6
2,076,431	-				+0.1
2,076,431	-				+1.6
2,076,453	+				+0.6
2,076,455	+				+0.7
2,076,456	-				-0.7
2,076,456	-				-1.4
2,076,479	+				-1.4
2,076,479	+				+0.3
2,076,687	-		PP_1852	0.37	-0.6
2,076,744	+		PP_1852	0.45	-0.4
2,076,744	+		PP_1852	0.45	-0.5
2,076,762	+		PP_1852	0.47	-0.2
2,076,763	-		PP_1852	0.47	+1.0
2,076,763	-		PP_1852	0.47	-2.5
2,076,764	+		PP_1852	0.47	+0.9
2,076,764	+		PP_1852	0.47	+0.3
2,076,764	+		PP_1852	0.47	+0.6
2,076,764	+		PP_1852	0.47	+0.2
2,076,764	+		PP_1852	0.47	+0.6
2,076,764	+		PP_1852	0.47	-0.1
2,076,764	+		PP_1852	0.47	+1.3
2,076,764	+		PP_1852	0.47	-0.3
2,076,764	+		PP_1852	0.47	+0.9
2,076,764	+		PP_1852	0.47	-0.9
2,076,765	-		PP_1852	0.47	+0.4
2,076,765	-		PP_1852	0.47	-0.7
2,076,765	-		PP_1852	0.47	+0.9
2,076,765	-		PP_1852	0.47	+0.9
2,076,765	-		PP_1852	0.47	+0.1
2,076,803	-		PP_1852	0.53	+0.1
2,076,819	+		PP_1852	0.55	-0.1
2,076,819	+		PP_1852	0.55	+0.8
2,076,820	-		PP_1852	0.55	+1.1
2,076,820	-		PP_1852	0.55	+0.2
2,076,820	-		PP_1852	0.55	+0.1
2,076,820	-		PP_1852	0.55	+0.3
2,077,040	+		PP_1852	0.84	-2.6
2,077,040	+		PP_1852	0.84	+0.6
2,077,040	+		PP_1852	0.84	-0.9
2,077,040	+		PP_1852	0.84	+0.3
2,077,041	-		PP_1852	0.84	-0.7
2,077,041	-		PP_1852	0.84	-0.3
2,077,041	-		PP_1852	0.84	-2.6
2,077,041	-		PP_1852	0.84	+1.3
2,077,041	-		PP_1852	0.84	+0.3
2,077,041	-		PP_1852	0.84	+0.5
2,077,086	+				+0.9
2,077,086	+				-0.5
2,077,086	+				-0.0
2,077,087	-				+0.4
2,077,087	-				+0.4
2,077,087	-				+0.5
2,077,087	-				+1.0
2,077,143	+				-0.4
2,077,144	-				-1.2
2,077,144	-				-0.2
2,077,144	-				+0.1
2,077,231	+				+1.1
2,077,232	-				+1.1
2,077,273	-				-1.6