Strain Fitness in Pseudomonas putida KT2440 around PP_5399

Experiment: 3-methyl-1-butanol 0.1 vol% (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-1-butanol 0.1 vol% (C)
6,155,297	+				+0.1
6,155,297	+				+1.1
6,155,297	+				-2.8
6,155,298	-				+0.7
6,155,324	+				+0.3
6,155,359	-				-2.5
6,155,359	-				+0.5
6,155,455	+				+0.7
6,155,539	+		PP_5399	0.19	-3.6
6,155,540	-		PP_5399	0.19	-3.2
6,155,540	-		PP_5399	0.19	-1.1
6,155,540	-		PP_5399	0.19	+0.1
6,155,562	-		PP_5399	0.22	+4.7
6,155,585	+		PP_5399	0.25	-4.0
6,155,585	+		PP_5399	0.25	-0.8
6,155,586	-		PP_5399	0.25	-1.4
6,155,586	-		PP_5399	0.25	+1.0
6,155,586	-		PP_5399	0.25	-2.8
6,155,586	-		PP_5399	0.25	-1.1
6,155,592	+		PP_5399	0.25	-1.5
6,155,592	+		PP_5399	0.25	-3.8
6,155,592	+		PP_5399	0.25	-1.2
6,155,592	+		PP_5399	0.25	-4.2
6,155,592	+		PP_5399	0.25	-0.7
6,155,592	+		PP_5399	0.25	-0.5
6,155,593	-		PP_5399	0.26	-1.3
6,155,593	-		PP_5399	0.26	-1.1
6,155,593	-		PP_5399	0.26	-2.1
6,155,593	-		PP_5399	0.26	-1.1
6,155,628	+		PP_5399	0.30	-2.2
6,155,629	-		PP_5399	0.30	+1.7
6,155,683	+		PP_5399	0.37	-1.0
6,155,699	+		PP_5399	0.39	-4.1
6,155,707	+		PP_5399	0.40	-0.3
6,155,707	+		PP_5399	0.40	-1.3
6,155,707	+		PP_5399	0.40	-0.7
6,155,708	-		PP_5399	0.40	+0.8
6,155,708	-		PP_5399	0.40	-0.9
6,155,713	+		PP_5399	0.41	-2.5
6,155,714	-		PP_5399	0.41	-1.8
6,155,747	+		PP_5399	0.46	+1.5
6,155,748	-		PP_5399	0.46	-1.9
6,155,797	-		PP_5399	0.52	-1.6
6,155,797	-		PP_5399	0.52	-3.1
6,155,797	-		PP_5399	0.52	-1.6
6,155,875	+		PP_5399	0.62	+0.1
6,155,875	+		PP_5399	0.62	+0.6
6,155,875	+		PP_5399	0.62	-1.1
6,155,876	-		PP_5399	0.62	-0.8
6,155,876	-		PP_5399	0.62	-2.4
6,155,876	-		PP_5399	0.62	-0.3
6,156,088	+		PP_5399	0.90	-0.8
6,156,175	+				-1.3
6,156,175	+				-2.3
6,156,175	+				-2.1
6,156,175	+				-0.9
6,156,175	+				-1.7
6,156,176	-				+1.0
6,156,176	-				+0.6
6,156,176	-				+0.1
6,156,176	-				-0.6
6,156,176	-				+0.2
6,156,176	-				+0.5
6,156,176	-				-1.2
6,156,229	-				-0.8
6,156,245	-				-0.5
6,156,267	-				+1.4
6,156,267	-				-2.7
6,156,269	-				+0.2
6,156,279	+				+0.8
6,156,279	+				+0.9
6,156,351	+				+0.7
6,156,351	+				+1.4
6,156,351	+				-1.2
6,156,352	-				+1.1
6,156,380	-				+0.6
6,156,384	+				-1.1
6,156,384	+				-0.1
6,156,384	+				-1.2
6,156,384	+				+0.7
6,156,385	-				+0.8
6,156,385	-				-0.5
6,156,389	+				+0.6
6,156,389	+				+1.7
6,156,389	+				+0.3
6,156,406	+				+0.4
6,156,407	-				-0.4
6,156,489	+				-1.9
6,156,489	+				-2.5
6,156,535	+				+1.0
6,156,535	+				-1.8
6,156,536	-				+1.9
6,156,844	-		PP_5400	0.26	-0.5
6,156,879	-		PP_5400	0.30	+1.6
6,156,925	-		PP_5400	0.34	-0.2
6,156,943	-		PP_5400	0.36	+1.4
6,156,943	-		PP_5400	0.36	-0.2
6,156,943	-		PP_5400	0.36	-0.3
6,156,943	-		PP_5400	0.36	-1.0
6,156,943	-		PP_5400	0.36	-0.5
6,156,943	-		PP_5400	0.36	+0.6
6,156,943	-		PP_5400	0.36	+0.6
6,156,943	-		PP_5400	0.36	+1.8
6,157,055	-		PP_5400	0.46	-0.4
6,157,066	-		PP_5400	0.47	+1.2
6,157,091	-		PP_5400	0.50	-0.0
6,157,140	-		PP_5400	0.54	+0.5
6,157,140	-		PP_5400	0.54	-0.4
6,157,140	-		PP_5400	0.54	+0.6
6,157,140	-		PP_5400	0.54	+0.4
6,157,140	-		PP_5400	0.54	-2.3
6,157,140	-		PP_5400	0.54	+0.1