Strain Fitness in Pseudomonas putida KT2440 around PP_5360

Experiment: 3-methyl-1-butanol 0.1 vol% (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-1-butanol 0.1 vol% (C)
6,108,782	+		PP_5359	0.12	+0.6
6,109,485	+		PP_5359	0.84	+0.9
6,109,528	-		PP_5359	0.89	-0.8
6,109,611	+				-0.2
6,109,611	+				-0.1
6,109,611	+				-0.1
6,109,612	-				-1.0
6,109,612	-				+1.1
6,109,612	-				+0.5
6,109,669	+				+1.9
6,109,669	+				-0.2
6,109,670	-				+1.2
6,109,779	+		PP_5360	0.16	-1.1
6,109,779	+		PP_5360	0.16	-0.2
6,109,780	-		PP_5360	0.16	-1.0
6,109,780	-		PP_5360	0.16	+0.1
6,109,780	-		PP_5360	0.16	+1.2
6,109,780	-		PP_5360	0.16	-0.2
6,109,783	+		PP_5360	0.17	+0.2
6,109,783	+		PP_5360	0.17	+0.6
6,109,784	-		PP_5360	0.17	-0.1
6,109,843	+		PP_5360	0.26	-0.5
6,109,843	+		PP_5360	0.26	-0.1
6,109,861	-		PP_5360	0.29	+1.5
6,109,884	+		PP_5360	0.33	-0.9
6,109,885	-		PP_5360	0.33	+1.5
6,109,885	-		PP_5360	0.33	-0.7
6,109,898	+		PP_5360	0.35	+1.0
6,109,898	+		PP_5360	0.35	+0.6
6,109,898	+		PP_5360	0.35	-0.7
6,109,899	-		PP_5360	0.35	-0.3
6,109,899	-		PP_5360	0.35	+0.7
6,109,921	+		PP_5360	0.39	+0.1
6,109,922	-		PP_5360	0.39	+1.0
6,109,922	-		PP_5360	0.39	+0.7
6,110,007	+		PP_5360	0.52	-0.5
6,110,007	+		PP_5360	0.52	+1.4
6,110,007	+		PP_5360	0.52	+0.8
6,110,007	+		PP_5360	0.52	-0.1
6,110,007	+		PP_5360	0.52	-0.2
6,110,007	+		PP_5360	0.52	+3.0
6,110,007	+		PP_5360	0.52	+0.7
6,110,007	+		PP_5360	0.52	+0.5
6,110,007	+		PP_5360	0.52	+1.4
6,110,007	+		PP_5360	0.52	+0.0
6,110,007	+		PP_5360	0.52	-0.1
6,110,007	+		PP_5360	0.52	+0.5
6,110,008	-		PP_5360	0.53	+2.1
6,110,008	-		PP_5360	0.53	-0.2
6,110,009	+		PP_5360	0.53	-1.8
6,110,009	+		PP_5360	0.53	+0.6
6,110,009	+		PP_5360	0.53	+1.3
6,110,009	+		PP_5360	0.53	+0.9
6,110,009	+		PP_5360	0.53	-0.8
6,110,009	+		PP_5360	0.53	+0.0
6,110,009	+		PP_5360	0.53	+1.6
6,110,010	-		PP_5360	0.53	+1.6
6,110,010	-		PP_5360	0.53	-1.4
6,110,010	-		PP_5360	0.53	+0.7
6,110,010	-		PP_5360	0.53	+0.6
6,110,010	-		PP_5360	0.53	-0.6
6,110,038	+		PP_5360	0.57	-0.0
6,110,039	-		PP_5360	0.58	+1.1
6,110,039	-		PP_5360	0.58	-0.0
6,110,039	-		PP_5360	0.58	+0.6
6,110,051	+		PP_5360	0.59	+0.6
6,110,052	-		PP_5360	0.60	+1.0
6,110,052	-		PP_5360	0.60	+0.3
6,110,343	+				-1.8
6,110,343	+				-1.0
6,110,444	+		PP_5361	0.12	-0.2
6,110,445	-		PP_5361	0.12	-0.9
6,110,617	+		PP_5361	0.26	+0.1
6,110,617	+		PP_5361	0.26	-0.1
6,110,618	-		PP_5361	0.26	+0.8
6,110,655	+		PP_5361	0.29	+0.2
6,110,655	+		PP_5361	0.29	-1.0
6,110,684	+		PP_5361	0.32	+0.1
6,110,749	+		PP_5361	0.37	+0.3
6,110,750	-		PP_5361	0.37	+0.3
6,110,766	+		PP_5361	0.38	-0.6
6,110,767	-		PP_5361	0.39	-0.5
6,110,767	-		PP_5361	0.39	-0.1
6,110,767	-		PP_5361	0.39	+2.8
6,110,767	-		PP_5361	0.39	+2.6
6,110,767	-		PP_5361	0.39	-0.2
6,110,846	+		PP_5361	0.45	+0.1
6,110,846	+		PP_5361	0.45	+1.5
6,110,846	+		PP_5361	0.45	+1.3
6,110,846	+		PP_5361	0.45	-0.4
6,110,846	+		PP_5361	0.45	+0.9
6,110,846	+		PP_5361	0.45	+0.5
6,110,847	-		PP_5361	0.45	-0.1
6,110,847	-		PP_5361	0.45	-0.8
6,110,880	+		PP_5361	0.48	+0.1
6,110,881	-		PP_5361	0.48	-2.0
6,110,881	-		PP_5361	0.48	+0.0
6,110,915	+		PP_5361	0.51	-1.4
6,111,076	+		PP_5361	0.64	+2.6
6,111,077	-		PP_5361	0.64	-0.2
6,111,077	-		PP_5361	0.64	+1.4
6,111,203	+		PP_5361	0.75	-0.6
6,111,226	+		PP_5361	0.77	+0.2