Strain Fitness in Pseudomonas putida KT2440 around PP_5330

Experiment: 3-methyl-1-butanol 0.1 vol% (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-1-butanol 0.1 vol% (C)
6,077,004	+		PP_5329	0.30	+1.7
6,077,004	+		PP_5329	0.30	+1.1
6,077,005	-		PP_5329	0.31	+5.2
6,077,090	-		PP_5329	0.39	-0.3
6,077,130	+		PP_5329	0.43	+1.0
6,077,131	-		PP_5329	0.43	+1.7
6,077,131	-		PP_5329	0.43	+0.7
6,077,136	+		PP_5329	0.44	+0.9
6,077,136	+		PP_5329	0.44	+3.4
6,077,136	+		PP_5329	0.44	+0.8
6,077,136	+		PP_5329	0.44	+2.5
6,077,137	-		PP_5329	0.44	+1.8
6,077,361	+		PP_5329	0.66	+1.3
6,077,368	-		PP_5329	0.67	+0.3
6,077,368	-		PP_5329	0.67	+0.7
6,077,492	+		PP_5329	0.79	+1.3
6,077,514	+		PP_5329	0.81	+1.7
6,077,515	-		PP_5329	0.82	+0.6
6,077,515	-		PP_5329	0.82	+2.7
6,077,601	+				-0.3
6,077,602	-				+1.9
6,077,668	+				-1.8
6,077,767	+				+1.1
6,077,767	+				+1.7
6,077,767	+				+1.8
6,077,767	+				-0.2
6,077,768	-				+0.4
6,077,772	+				+1.8
6,077,772	+				+1.7
6,077,773	-				+1.7
6,077,837	+				-2.5
6,077,850	-				+0.8
6,077,850	-				-0.6
6,077,884	+				+0.7
6,077,885	-				+1.4
6,077,885	-				-3.7
6,077,891	+				-0.4
6,077,891	+				+1.0
6,077,959	-				-1.8
6,078,001	-				+0.4
6,078,004	-				+0.4
6,078,004	-				+0.3
6,078,004	-				-0.3
6,078,144	+		PP_5330	0.16	-0.2
6,078,144	+		PP_5330	0.16	+0.6
6,078,144	+		PP_5330	0.16	-2.3
6,078,144	+		PP_5330	0.16	+1.4
6,078,145	-		PP_5330	0.16	-2.2
6,078,145	-		PP_5330	0.16	+0.0
6,078,145	-		PP_5330	0.16	-0.8
6,078,145	-		PP_5330	0.16	-0.2
6,078,145	-		PP_5330	0.16	-0.7
6,078,145	-		PP_5330	0.16	-1.1
6,078,145	-		PP_5330	0.16	-1.5
6,078,231	+		PP_5330	0.23	-3.7
6,078,322	+		PP_5330	0.30	-0.0
6,078,322	+		PP_5330	0.30	-0.2
6,078,323	-		PP_5330	0.30	+0.5
6,078,323	-		PP_5330	0.30	-1.3
6,078,323	-		PP_5330	0.30	-3.7
6,078,323	-		PP_5330	0.30	-1.3
6,078,323	-		PP_5330	0.30	-3.0
6,078,323	-		PP_5330	0.30	-2.0
6,078,323	-		PP_5330	0.30	+0.2
6,078,390	+		PP_5330	0.35	-1.1
6,078,390	+		PP_5330	0.35	-1.1
6,078,390	+		PP_5330	0.35	+0.6
6,078,391	-		PP_5330	0.35	-0.6
6,078,391	-		PP_5330	0.35	-3.1
6,078,391	-		PP_5330	0.35	+0.1
6,078,391	-		PP_5330	0.35	-2.3
6,078,391	-		PP_5330	0.35	-0.2
6,078,431	+		PP_5330	0.38	-0.8
6,078,432	-		PP_5330	0.38	-2.4
6,078,432	-		PP_5330	0.38	-1.5
6,078,642	+		PP_5330	0.55	+0.0
6,078,642	+		PP_5330	0.55	-1.9
6,078,642	+		PP_5330	0.55	-0.1
6,078,643	-		PP_5330	0.55	-1.0
6,078,666	+		PP_5330	0.57	+1.2
6,078,667	-		PP_5330	0.57	+1.5
6,078,879	+		PP_5330	0.73	-0.4
6,078,880	-		PP_5330	0.73	-0.6
6,078,880	-		PP_5330	0.73	-3.4
6,079,008	+		PP_5330	0.83	+0.1
6,079,123	-				-4.2
6,079,167	+				+0.7
6,079,167	+				+0.4
6,079,167	+				+0.2
6,079,244	+				-0.5
6,079,313	+				+0.3
6,079,344	+				+1.3
6,079,345	-				-2.3
6,079,375	+				-0.5
6,079,382	+				+2.2
6,079,382	+				+0.9
6,079,382	+				+0.9
6,079,382	+				+2.2
6,079,383	-				-0.3
6,079,383	-				-3.5
6,079,383	-				-0.4
6,079,384	+				+1.1
6,079,385	-				-2.6
6,079,385	-				-2.3
6,079,385	-				-3.9
6,079,385	-				-1.5
6,079,385	-				-1.3
6,079,385	-				-1.6
6,079,385	-				-2.0
6,079,385	-				-3.3
6,079,385	-				-2.8
6,079,385	-				-2.6
6,079,385	-				-4.8
6,079,386	+				+1.3
6,079,386	+				+1.2
6,079,386	+				+2.6
6,079,386	+				+1.9
6,079,386	+				+1.5
6,079,387	-				-2.7
6,079,387	-				-4.0
6,079,387	-				-3.0
6,079,400	-				-2.4
6,079,400	-				-4.3
6,079,405	+				+1.4
6,079,405	+				+1.7
6,079,405	+				+1.4
6,079,405	+				+2.3
6,079,405	+				-0.1
6,079,405	+				+4.6
6,079,405	+				+2.7
6,079,405	+				+0.0
6,079,406	-				-3.7
6,079,406	-				-1.3
6,079,406	-				-3.6
6,079,406	-				-3.2
6,079,416	+				+0.2
6,079,449	+				+1.3
6,079,450	-				-1.0
6,079,507	+				-3.4
6,079,507	+				-1.3
6,079,507	+				+2.2
6,079,507	+				+1.4
6,079,507	+				-0.4
6,079,508	-				-3.1
6,079,508	-				-3.6
6,079,508	-				-3.3
6,079,508	-				-4.2
6,079,508	-				-1.8
6,079,510	+				+0.8
6,079,510	+				+1.2
6,079,510	+				-0.2
6,079,511	-				-2.4
6,079,511	-				-2.0
6,079,511	-				-1.2
6,079,511	-				-2.5
6,079,824	+		PP_5331	0.59	-2.7
6,079,824	+		PP_5331	0.59	-1.4
6,079,824	+		PP_5331	0.59	-2.0
6,079,825	-		PP_5331	0.60	-2.8
6,079,826	+		PP_5331	0.60	+0.3
6,079,827	-		PP_5331	0.60	-2.5
6,079,927	+		PP_5331	0.85	-3.7
6,079,999	+				-1.5
6,080,168	+		PP_5332	0.12	-2.8
6,080,168	+		PP_5332	0.12	-0.4
6,080,169	-		PP_5332	0.12	-0.3
6,080,169	-		PP_5332	0.12	-0.6
6,080,178	+		PP_5332	0.13	-2.5