Strain Fitness in Pseudomonas putida KT2440 around PP_5302

Experiment: 3-methyl-1-butanol 0.1 vol% (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-1-butanol 0.1 vol% (C)
6,048,198	+		PP_5300	0.64	-0.5
6,048,198	+		PP_5300	0.64	-0.7
6,048,198	+		PP_5300	0.64	-0.1
6,048,198	+		PP_5300	0.64	+0.9
6,048,198	+		PP_5300	0.64	+1.5
6,048,199	-		PP_5300	0.64	-0.4
6,048,199	-		PP_5300	0.64	-0.1
6,048,199	-		PP_5300	0.64	-3.3
6,048,202	+		PP_5300	0.64	-0.6
6,048,202	+		PP_5300	0.64	-0.6
6,048,202	+		PP_5300	0.64	-1.2
6,048,202	+		PP_5300	0.64	-1.6
6,048,202	+		PP_5300	0.64	+0.5
6,048,202	+		PP_5300	0.64	+0.1
6,048,203	-		PP_5300	0.64	+0.9
6,048,203	-		PP_5300	0.64	-0.5
6,048,203	-		PP_5300	0.64	+0.4
6,048,203	-		PP_5300	0.64	-1.1
6,048,203	-		PP_5300	0.64	-2.0
6,048,296	+		PP_5300	0.73	+0.8
6,048,343	-		PP_5300	0.78	+1.6
6,048,380	-		PP_5300	0.81	+0.9
6,048,415	-		PP_5300	0.85	-0.1
6,048,415	-		PP_5300	0.85	+0.4
6,048,415	-		PP_5300	0.85	-1.5
6,048,415	-		PP_5300	0.85	+0.9
6,048,415	-		PP_5300	0.85	-1.0
6,048,580	-				-1.5
6,048,640	+				+0.2
6,048,647	+				-1.5
6,048,774	+				+0.3
6,048,802	+				-0.5
6,051,241	+				-0.3
6,051,241	+				-0.3
6,051,241	+				+0.7
6,051,241	+				-1.7
6,051,242	-				-0.7
6,051,242	-				+0.3
6,051,245	+				+0.7
6,051,245	+				-1.4
6,051,245	+				-2.6
6,051,245	+				-0.1
6,051,246	-				-0.8
6,051,246	-				-2.3
6,051,322	+		PP_5303	0.13	-1.4
6,051,322	+		PP_5303	0.13	-4.0
6,051,322	+		PP_5303	0.13	-1.8
6,051,323	-		PP_5303	0.14	-3.8
6,051,355	+		PP_5303	0.22	-3.5
6,051,355	+		PP_5303	0.22	-1.5
6,051,355	+		PP_5303	0.22	-3.6
6,051,355	+		PP_5303	0.22	-3.1
6,051,355	+		PP_5303	0.22	-3.7
6,051,355	+		PP_5303	0.22	-4.0
6,051,356	-		PP_5303	0.22	-1.3
6,051,534	-				-0.1
6,051,569	-		PP_5303	0.78	-2.7
6,051,746	-				+0.5
6,051,746	-				-0.4
6,051,746	-				+0.4
6,051,746	-				+1.4
6,051,905	+		PP_5304	0.27	-0.7
6,051,905	+		PP_5304	0.27	+1.6
6,051,906	-		PP_5304	0.27	+0.1
6,051,906	-		PP_5304	0.27	-0.5
6,051,909	+		PP_5304	0.27	-0.9
6,051,909	+		PP_5304	0.27	+0.6
6,051,909	+		PP_5304	0.27	-0.7
6,051,909	+		PP_5304	0.27	-0.1
6,051,909	+		PP_5304	0.27	-1.8
6,051,909	+		PP_5304	0.27	-0.1
6,051,909	+		PP_5304	0.27	-1.0
6,051,909	+		PP_5304	0.27	-0.5
6,051,909	+		PP_5304	0.27	-1.3
6,051,909	+		PP_5304	0.27	+0.2
6,051,910	-		PP_5304	0.28	+0.4
6,051,910	-		PP_5304	0.28	-0.3
6,051,910	-		PP_5304	0.28	+0.2
6,051,910	-		PP_5304	0.28	-2.1
6,051,910	-		PP_5304	0.28	-0.4
6,051,911	+		PP_5304	0.28	+0.1
6,051,912	-		PP_5304	0.28	-1.6
6,051,912	-		PP_5304	0.28	+0.8
6,051,912	-		PP_5304	0.28	+0.3
6,051,912	-		PP_5304	0.28	-0.3
6,051,912	-		PP_5304	0.28	+0.6
6,052,122	+		PP_5304	0.57	-0.1
6,052,131	+		PP_5304	0.58	-2.9
6,052,132	-		PP_5304	0.58	-1.0
6,052,132	-		PP_5304	0.58	+1.1
6,052,142	+		PP_5304	0.59	+0.1
6,052,143	-		PP_5304	0.59	-1.1
6,052,143	-		PP_5304	0.59	-0.2