Strain Fitness in Pseudomonas putida KT2440 around PP_5223

Experiment: 3-methyl-1-butanol 0.1 vol% (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-1-butanol 0.1 vol% (C)
5,958,560	+		PP_5222	0.69	+1.0
5,958,605	+		PP_5222	0.70	+0.4
5,958,661	+		PP_5222	0.72	+0.5
5,958,661	+		PP_5222	0.72	-0.6
5,958,668	+		PP_5222	0.73	+1.9
5,958,668	+		PP_5222	0.73	-2.0
5,958,668	+		PP_5222	0.73	+1.3
5,958,668	+		PP_5222	0.73	-1.7
5,958,668	+		PP_5222	0.73	+0.1
5,958,669	-		PP_5222	0.73	-0.5
5,958,758	-		PP_5222	0.76	+0.1
5,958,781	+		PP_5222	0.76	-1.2
5,958,793	+		PP_5222	0.77	-0.3
5,958,793	+		PP_5222	0.77	+0.4
5,958,861	+		PP_5222	0.79	-0.5
5,958,861	+		PP_5222	0.79	-0.8
5,958,875	-				+1.3
5,958,904	+		PP_5222	0.81	+0.0
5,958,904	+		PP_5222	0.81	+1.2
5,958,904	+		PP_5222	0.81	+0.1
5,958,904	+		PP_5222	0.81	+1.5
5,958,904	+		PP_5222	0.81	-0.1
5,958,904	+		PP_5222	0.81	+0.2
5,958,904	+		PP_5222	0.81	+0.8
5,958,904	+		PP_5222	0.81	+0.3
5,958,905	-		PP_5222	0.81	+0.4
5,958,905	-		PP_5222	0.81	-3.2
5,958,905	-		PP_5222	0.81	-0.4
5,958,905	-		PP_5222	0.81	-0.1
5,958,905	-		PP_5222	0.81	-0.2
5,958,905	-		PP_5222	0.81	+2.5
5,958,905	-		PP_5222	0.81	+0.9
5,958,919	+		PP_5222	0.81	+0.2
5,958,919	+		PP_5222	0.81	-0.3
5,958,919	+		PP_5222	0.81	+0.2
5,958,919	+		PP_5222	0.81	+0.1
5,958,919	+		PP_5222	0.81	-0.4
5,958,920	-		PP_5222	0.81	+0.7
5,958,920	-		PP_5222	0.81	-1.9
5,958,920	-		PP_5222	0.81	+0.5
5,959,150	+		PP_5222	0.89	-0.4
5,959,150	+		PP_5222	0.89	-0.1
5,959,150	+		PP_5222	0.89	+1.2
5,959,150	+		PP_5222	0.89	+0.0
5,959,150	+		PP_5222	0.89	+1.9
5,959,150	+		PP_5222	0.89	+1.2
5,959,151	-		PP_5222	0.89	+2.1
5,959,151	-		PP_5222	0.89	-1.2
5,959,151	-		PP_5222	0.89	-2.8
5,959,151	-		PP_5222	0.89	+0.6
5,959,151	-		PP_5222	0.89	-1.6
5,959,153	+		PP_5222	0.89	+0.6
5,959,153	+		PP_5222	0.89	+1.6
5,959,153	+		PP_5222	0.89	-1.1
5,959,153	+		PP_5222	0.89	+0.4
5,959,154	-		PP_5222	0.90	-0.4
5,959,154	-		PP_5222	0.90	-0.3
5,959,154	-		PP_5222	0.90	-1.8
5,959,210	+				-2.9
5,959,210	+				-1.0
5,959,258	+				+1.6
5,959,318	+				-0.4
5,959,318	+				+0.4
5,959,318	+				+0.4
5,959,318	+				+0.6
5,959,318	+				-0.3
5,959,318	+				+1.7
5,959,318	+				+0.5
5,959,318	+				-0.1
5,959,319	-				-2.9
5,959,319	-				-0.5
5,959,319	-				+0.1
5,959,319	-				-2.7
5,959,319	-				+0.1
5,959,319	-				-0.8
5,959,319	-				+0.6
5,959,320	+				-1.3
5,959,321	-				+1.8
5,959,379	-				+1.3
5,959,379	-				-0.3
5,959,387	+				+0.0
5,959,387	+				+0.2
5,959,388	-				+0.2
5,959,388	-				-0.8
5,959,523	+				-0.8
5,959,523	+				+1.0
5,959,523	+				+1.8
5,959,524	-				+0.1
5,959,532	+				-0.6
5,959,533	-				-1.0
5,959,556	+				-0.6
5,959,556	+				-0.3
5,959,557	-				+0.0
5,959,557	-				-0.4
5,959,718	+		PP_5223	0.48	-0.3
5,959,718	+		PP_5223	0.48	-0.6
5,959,719	-		PP_5223	0.48	-0.3
5,959,851	+		PP_5223	0.80	+0.5
5,959,891	+		PP_5223	0.90	-0.8
5,959,891	+		PP_5223	0.90	-3.1
5,959,891	+		PP_5223	0.90	-2.0
5,959,891	+		PP_5223	0.90	-1.0
5,959,892	-				-0.5
5,959,892	-				-0.7
5,959,892	-				+1.4
5,960,045	+				+0.8
5,960,045	+				-2.0
5,960,046	-				+0.7
5,960,062	+				-0.7
5,960,223	+		PP_5224	0.64	+0.4
5,960,224	-		PP_5224	0.64	+0.4
5,960,224	-		PP_5224	0.64	-0.2
5,960,224	-		PP_5224	0.64	+0.7
5,960,266	+		PP_5224	0.83	-0.3
5,960,267	-		PP_5224	0.84	-0.6
5,960,298	-				-0.4
5,960,353	-		PP_5225	0.14	-1.5
5,960,665	-				-2.0
5,960,685	-				-0.2
5,960,758	-				+0.3
5,960,758	-				-0.5
5,960,758	-				-0.4
5,960,758	-				-0.1
5,960,778	+				+0.4
5,960,779	-				+0.7
5,960,784	+				-2.9
5,960,784	+				-0.4
5,960,835	+				+0.6
5,960,836	-				+0.0
5,960,837	+				-0.2
5,960,837	+				-3.2
5,960,837	+				-2.8