Strain Fitness in Pseudomonas putida KT2440 around PP_5219

Experiment: 3-methyl-1-butanol 0.1 vol% (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-1-butanol 0.1 vol% (C)
5,952,757	+				-2.1
5,952,757	+				-3.0
5,952,757	+				-4.5
5,952,757	+				-2.2
5,952,757	+				-4.2
5,952,758	-				-2.6
5,952,758	-				-3.2
5,952,826	+				-1.8
5,952,826	+				-3.6
5,952,827	-				-1.5
5,952,827	-				-1.8
5,952,827	-				-1.4
5,952,999	+				-4.4
5,953,010	+				-2.3
5,953,010	+				-2.0
5,953,010	+				-2.1
5,953,011	-				+2.3
5,953,011	-				+2.4
5,953,011	-				+2.5
5,953,036	+				-1.7
5,953,051	+				+1.8
5,953,051	+				+2.1
5,953,051	+				+1.7
5,953,052	-				-0.5
5,953,066	+				+1.1
5,953,067	-				-0.7
5,953,067	-				+0.5
5,953,092	-				+1.3
5,953,404	+		PP_5218	0.27	+0.9
5,953,404	+		PP_5218	0.27	+0.9
5,953,405	-		PP_5218	0.27	+1.2
5,953,506	-		PP_5218	0.43	+3.6
5,953,534	-		PP_5218	0.47	+0.9
5,953,534	-		PP_5218	0.47	-1.8
5,953,534	-		PP_5218	0.47	-0.1
5,953,594	-		PP_5218	0.56	-0.5
5,953,594	-		PP_5218	0.56	+1.3
5,953,594	-		PP_5218	0.56	+0.0
5,953,610	+		PP_5218	0.59	+0.7
5,953,611	-		PP_5218	0.59	-0.2
5,953,708	+				+0.5
5,953,708	+				+0.8
5,953,708	+				+0.7
5,953,708	+				+0.8
5,953,709	-				-0.0
5,953,709	-				+0.7
5,953,709	-				-0.7
5,953,770	-				+2.7
5,953,832	-				+0.8
5,953,832	-				+1.2
5,953,894	+		PP_5219	0.14	-0.4
5,953,894	+		PP_5219	0.14	+0.7
5,953,894	+		PP_5219	0.14	-0.5
5,953,895	-		PP_5219	0.15	+0.4
5,954,053	+		PP_5219	0.27	-0.6
5,954,053	+		PP_5219	0.27	-0.1
5,954,053	+		PP_5219	0.27	-2.1
5,954,053	+		PP_5219	0.27	-0.2
5,954,071	+		PP_5219	0.28	+1.7
5,954,072	-		PP_5219	0.28	+0.1
5,954,072	-		PP_5219	0.28	+0.8
5,954,072	-		PP_5219	0.28	-1.6
5,954,072	-		PP_5219	0.28	+0.8
5,954,095	+		PP_5219	0.30	-1.7
5,954,095	+		PP_5219	0.30	-1.2
5,954,095	+		PP_5219	0.30	-0.0
5,954,095	+		PP_5219	0.30	-1.5
5,954,095	+		PP_5219	0.30	+0.2
5,954,096	-		PP_5219	0.30	-0.3
5,954,096	-		PP_5219	0.30	+1.6
5,954,167	+		PP_5219	0.35	+0.7
5,954,168	-		PP_5219	0.36	-0.1
5,954,216	+		PP_5219	0.39	+0.4
5,954,216	+		PP_5219	0.39	+0.6
5,954,217	-		PP_5219	0.39	+0.0
5,954,217	-		PP_5219	0.39	+0.1
5,954,272	+		PP_5219	0.44	+0.7
5,954,273	-		PP_5219	0.44	+1.7
5,954,273	-		PP_5219	0.44	-1.1
5,954,292	+		PP_5219	0.45	+1.5
5,954,404	+		PP_5219	0.54	+0.7
5,954,405	-		PP_5219	0.54	+0.5
5,954,405	-		PP_5219	0.54	+1.4
5,954,405	-		PP_5219	0.54	-2.0
5,954,419	+		PP_5219	0.55	+0.5
5,954,419	+		PP_5219	0.55	+1.6
5,954,419	+		PP_5219	0.55	+1.7
5,954,419	+		PP_5219	0.55	+1.9
5,954,419	+		PP_5219	0.55	+1.8
5,954,420	-		PP_5219	0.55	+0.1
5,954,420	-		PP_5219	0.55	+0.3
5,954,498	+		PP_5219	0.61	+1.4
5,954,499	-		PP_5219	0.61	+2.0
5,954,524	+		PP_5219	0.63	+1.8
5,954,593	+		PP_5219	0.68	+1.3
5,954,594	-		PP_5219	0.68	+1.3
5,954,653	+		PP_5219	0.73	+1.4
5,954,653	+		PP_5219	0.73	+3.0
5,954,653	+		PP_5219	0.73	+0.6
5,954,654	-		PP_5219	0.73	+1.3
5,954,654	-		PP_5219	0.73	-2.5
5,954,728	+		PP_5219	0.79	+2.3
5,954,728	+		PP_5219	0.79	+2.1
5,954,729	-		PP_5219	0.79	-0.1
5,954,729	-		PP_5219	0.79	+0.2
5,954,729	-		PP_5219	0.79	+1.4
5,954,731	+		PP_5219	0.79	+1.4
5,954,731	+		PP_5219	0.79	+0.9
5,954,731	+		PP_5219	0.79	+2.2
5,954,732	-		PP_5219	0.79	+0.1
5,954,732	-		PP_5219	0.79	+0.4
5,954,744	-		PP_5219	0.80	+1.6
5,954,824	+		PP_5219	0.86	+0.1
5,954,824	+		PP_5219	0.86	+0.4
5,954,824	+		PP_5219	0.86	+2.1
5,954,824	+		PP_5219	0.86	+0.4
5,954,824	+		PP_5219	0.86	+0.9
5,954,824	+		PP_5219	0.86	+0.9
5,954,825	-		PP_5219	0.86	-0.4
5,954,825	-		PP_5219	0.86	-0.5
5,954,825	-		PP_5219	0.86	-0.1
5,954,825	-		PP_5219	0.86	+0.8
5,954,825	-		PP_5219	0.86	-0.9
5,954,825	-		PP_5219	0.86	-1.1
5,954,825	-		PP_5219	0.86	+1.0
5,954,825	-		PP_5219	0.86	+1.1
5,954,953	-				-3.2
5,954,953	-				+0.0
5,954,953	-				-0.1
5,954,959	-				+0.3
5,954,979	+				+1.7
5,954,980	-				-0.1
5,954,991	+				+0.2
5,954,991	+				+1.9
5,954,991	+				+0.2
5,954,992	-				+0.0
5,955,035	-				+0.2
5,955,035	-				+1.2
5,955,058	-				-1.5
5,955,077	+				+0.9
5,955,107	+				+0.3
5,955,107	+				+0.9
5,955,107	+				-2.1
5,955,108	-				-0.7
5,955,129	-				-0.1
5,955,260	+		PP_5220	0.23	-2.2
5,955,260	+		PP_5220	0.23	+0.7
5,955,260	+		PP_5220	0.23	-0.1
5,955,260	+		PP_5220	0.23	+0.8
5,955,260	+		PP_5220	0.23	+1.9
5,955,260	+		PP_5220	0.23	-0.3
5,955,260	+		PP_5220	0.23	-1.0
5,955,261	-		PP_5220	0.23	-0.8
5,955,261	-		PP_5220	0.23	+2.6
5,955,261	-		PP_5220	0.23	+0.4
5,955,261	-		PP_5220	0.23	+0.4
5,955,261	-		PP_5220	0.23	+0.1
5,955,261	-		PP_5220	0.23	+0.1
5,955,261	-		PP_5220	0.23	-0.2
5,955,261	-				+0.0
5,955,261	-		PP_5220	0.23	-2.2
5,955,305	+		PP_5220	0.29	-0.3
5,955,305	+		PP_5220	0.29	-2.0
5,955,306	-		PP_5220	0.30	-3.2
5,955,306	-		PP_5220	0.30	+0.1
5,955,306	-		PP_5220	0.30	+1.4
5,955,306	-		PP_5220	0.30	-0.3
5,955,306	-		PP_5220	0.30	-0.1
5,955,642	-		PP_5220	0.80	-0.2
5,955,642	-		PP_5220	0.80	+1.3
5,955,642	-		PP_5220	0.80	+0.9
5,955,691	+		PP_5220	0.87	-2.2
5,955,691	+		PP_5220	0.87	+1.3
5,955,692	-		PP_5220	0.88	-0.4
5,955,733	+				-0.9
5,955,733	+				+1.3
5,955,772	+				-1.5
5,955,772	+				+0.7
5,955,777	+				-1.7
5,955,778	-				-0.9
5,955,778	-				-1.5
5,955,778	-				+0.8
5,955,778	-				+0.0
5,955,898	-				+2.7