Experiment: 3-methyl-1-butanol 0.1 vol% (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_5186 and PP_5187 are separated by 116 nucleotides PP_5187 and PP_5188 are separated by 94 nucleotides PP_5188 and PP_5189 are separated by 126 nucleotides
PP_5186: PP_5186 - acetylornithine deacetylase, at 5,915,684 to 5,916,826
_5186
PP_5187: PP_5187 - putative thiamine triphosphatase, at 5,916,943 to 5,918,310
_5187
PP_5188: PP_5188 - putative transcriptional regulator (AsnC/Lrp family), at 5,918,405 to 5,918,875
_5188
PP_5189: PP_5189 - conserved protein of unknown function, at 5,919,002 to 5,919,307
_5189
Position (kb) 5916
5917
5918
5919 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5915.956 kb on - strand, within PP_5186 at 5916.082 kb on + strand, within PP_5186 at 5916.083 kb on - strand, within PP_5186 at 5916.157 kb on + strand, within PP_5186 at 5916.157 kb on + strand, within PP_5186 at 5916.158 kb on - strand, within PP_5186 at 5916.158 kb on - strand, within PP_5186 at 5916.158 kb on - strand, within PP_5186 at 5916.158 kb on - strand, within PP_5186 at 5916.159 kb on + strand, within PP_5186 at 5916.159 kb on + strand, within PP_5186 at 5916.159 kb on + strand, within PP_5186 at 5916.159 kb on + strand, within PP_5186 at 5916.159 kb on + strand, within PP_5186 at 5916.160 kb on - strand, within PP_5186 at 5916.160 kb on - strand, within PP_5186 at 5916.160 kb on - strand, within PP_5186 at 5916.833 kb on - strand at 5916.857 kb on + strand at 5916.857 kb on + strand at 5916.857 kb on + strand at 5916.857 kb on + strand at 5916.858 kb on - strand at 5916.858 kb on - strand at 5916.858 kb on - strand at 5916.858 kb on - strand at 5916.863 kb on + strand at 5916.864 kb on - strand at 5916.879 kb on + strand at 5916.879 kb on + strand at 5916.904 kb on - strand at 5917.066 kb on + strand at 5917.066 kb on + strand at 5917.327 kb on + strand, within PP_5187 at 5917.567 kb on + strand, within PP_5187 at 5917.568 kb on - strand, within PP_5187 at 5917.568 kb on - strand, within PP_5187 at 5917.568 kb on - strand, within PP_5187 at 5917.624 kb on + strand, within PP_5187 at 5917.910 kb on + strand, within PP_5187 at 5917.910 kb on + strand, within PP_5187 at 5918.072 kb on - strand, within PP_5187 at 5918.113 kb on - strand, within PP_5187 at 5918.182 kb on + strand at 5918.334 kb on + strand at 5918.346 kb on + strand at 5918.346 kb on + strand at 5918.347 kb on - strand at 5918.347 kb on - strand at 5918.379 kb on - strand at 5918.425 kb on + strand at 5918.518 kb on - strand, within PP_5188 at 5918.577 kb on + strand, within PP_5188 at 5918.577 kb on + strand, within PP_5188 at 5918.577 kb on + strand, within PP_5188 at 5918.577 kb on + strand, within PP_5188 at 5918.578 kb on - strand, within PP_5188 at 5918.578 kb on - strand, within PP_5188 at 5918.578 kb on - strand, within PP_5188 at 5918.578 kb on - strand, within PP_5188 at 5918.578 kb on - strand, within PP_5188 at 5918.578 kb on - strand, within PP_5188 at 5918.622 kb on + strand, within PP_5188 at 5918.877 kb on - strand at 5918.906 kb on + strand at 5918.998 kb on + strand at 5918.998 kb on + strand at 5918.998 kb on + strand at 5918.998 kb on + strand at 5918.998 kb on + strand at 5918.998 kb on + strand at 5918.999 kb on - strand at 5919.001 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 3-methyl-1-butanol 0.1 vol% (C) remove 5,915,956 - PP_5186 0.24 -0.3 5,916,082 + PP_5186 0.35 +0.6 5,916,083 - PP_5186 0.35 -0.3 5,916,157 + PP_5186 0.41 +0.7 5,916,157 + PP_5186 0.41 +2.0 5,916,158 - PP_5186 0.41 +1.7 5,916,158 - PP_5186 0.41 -2.0 5,916,158 - PP_5186 0.41 -0.6 5,916,158 - PP_5186 0.41 -0.2 5,916,159 + PP_5186 0.42 +0.8 5,916,159 + PP_5186 0.42 +0.2 5,916,159 + PP_5186 0.42 +0.4 5,916,159 + PP_5186 0.42 -1.0 5,916,159 + PP_5186 0.42 -1.8 5,916,160 - PP_5186 0.42 -0.6 5,916,160 - PP_5186 0.42 -0.1 5,916,160 - PP_5186 0.42 +0.4 5,916,833 - -0.4 5,916,857 + -1.0 5,916,857 + -2.4 5,916,857 + -0.9 5,916,857 + -2.7 5,916,858 - -0.0 5,916,858 - -0.0 5,916,858 - +1.9 5,916,858 - +0.8 5,916,863 + -1.9 5,916,864 - +0.2 5,916,879 + +0.6 5,916,879 + -2.1 5,916,904 - -1.1 5,917,066 + -1.4 5,917,066 + -1.6 5,917,327 + PP_5187 0.28 -2.2 5,917,567 + PP_5187 0.46 -0.2 5,917,568 - PP_5187 0.46 -0.4 5,917,568 - PP_5187 0.46 -0.5 5,917,568 - PP_5187 0.46 +0.4 5,917,624 + PP_5187 0.50 -0.9 5,917,910 + PP_5187 0.71 -0.1 5,917,910 + PP_5187 0.71 -1.6 5,918,072 - PP_5187 0.83 -0.9 5,918,113 - PP_5187 0.86 -0.2 5,918,182 + -1.8 5,918,334 + +0.9 5,918,346 + -2.4 5,918,346 + -1.0 5,918,347 - +1.4 5,918,347 - +0.3 5,918,379 - -2.1 5,918,425 + -0.4 5,918,518 - PP_5188 0.24 +1.3 5,918,577 + PP_5188 0.37 +0.5 5,918,577 + PP_5188 0.37 +1.0 5,918,577 + PP_5188 0.37 +0.1 5,918,577 + PP_5188 0.37 -0.6 5,918,578 - PP_5188 0.37 -1.3 5,918,578 - PP_5188 0.37 -0.4 5,918,578 - PP_5188 0.37 -1.8 5,918,578 - PP_5188 0.37 +0.1 5,918,578 - PP_5188 0.37 -0.3 5,918,578 - PP_5188 0.37 -1.0 5,918,622 + PP_5188 0.46 -0.3 5,918,877 - -1.0 5,918,906 + -0.0 5,918,998 + -0.3 5,918,998 + +2.6 5,918,998 + +0.9 5,918,998 + -0.8 5,918,998 + +0.4 5,918,998 + -0.5 5,918,999 - -0.2 5,919,001 + -0.3
Or see this region's nucleotide sequence