Strain Fitness in Pseudomonas putida KT2440 around PP_5150

Experiment: 3-methyl-1-butanol 0.1 vol% (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-1-butanol 0.1 vol% (C)
5,875,305	+		PP_5149	0.43	-0.7
5,875,368	+		PP_5149	0.47	-0.4
5,875,368	+		PP_5149	0.47	+2.9
5,875,369	-		PP_5149	0.47	-0.5
5,875,369	-		PP_5149	0.47	-0.2
5,875,402	+		PP_5149	0.49	+0.1
5,875,442	-		PP_5149	0.52	-1.6
5,875,575	-		PP_5149	0.61	-0.8
5,875,597	-		PP_5149	0.62	-0.1
5,875,597	-		PP_5149	0.62	+0.0
5,875,597	-		PP_5149	0.62	+0.3
5,875,605	+		PP_5149	0.63	+0.0
5,875,606	-		PP_5149	0.63	-1.1
5,875,734	+		PP_5149	0.71	+1.0
5,875,734	+		PP_5149	0.71	+0.1
5,875,735	-		PP_5149	0.71	+0.9
5,875,746	+		PP_5149	0.72	-0.3
5,875,746	+		PP_5149	0.72	+0.3
5,875,782	+				+0.6
5,876,002	+		PP_5149	0.89	-0.2
5,876,002	+		PP_5149	0.89	-0.9
5,876,002	+		PP_5149	0.89	+1.2
5,876,003	-		PP_5149	0.89	+0.3
5,876,003	-		PP_5149	0.89	-0.6
5,876,005	-		PP_5149	0.89	-2.3
5,876,031	-				-1.3
5,876,127	+				+1.0
5,876,128	-				-0.9
5,876,157	+				-0.7
5,876,158	-				+0.2
5,876,158	-				+0.7
5,876,212	+				+0.6
5,876,224	-				-0.1
5,876,224	-				+0.6
5,876,259	+				-1.4
5,876,259	+				-0.4
5,876,260	-				+0.4
5,876,261	+				+0.7
5,876,261	+				-0.5
5,876,261	+				+0.7
5,876,264	+				-0.3
5,876,264	+				+0.1
5,877,004	+				+1.6
5,877,004	+				-1.0
5,877,004	+				-0.6
5,877,004	+				+0.0
5,877,011	+				+0.3
5,877,011	+				-0.9
5,877,044	+				+0.2
5,877,108	+				+0.1
5,877,108	+				+1.9
5,877,108	+				-0.5
5,877,108	+				+2.0
5,877,109	-				+0.5
5,877,109	-				-0.5
5,877,109	-				-0.7
5,877,135	+				+1.0
5,877,135	+				+0.6
5,877,136	-				+0.8
5,877,224	-		PP_5151	0.16	-0.6
5,877,242	+		PP_5151	0.18	+0.7
5,877,243	-		PP_5151	0.18	-0.5
5,877,382	-		PP_5151	0.33	+1.0
5,877,423	+		PP_5151	0.38	-1.5
5,877,423	+		PP_5151	0.38	+0.6
5,877,424	-		PP_5151	0.38	-1.0
5,877,424	-		PP_5151	0.38	-1.1
5,877,424	-		PP_5151	0.38	-0.2
5,877,424	-		PP_5151	0.38	-0.9
5,877,424	-		PP_5151	0.38	-1.2
5,877,424	-		PP_5151	0.38	+1.1
5,877,582	-		PP_5151	0.55	+0.3
5,877,621	+		PP_5151	0.60	-3.4
5,877,621	+		PP_5151	0.60	+1.3
5,877,621	+		PP_5151	0.60	-1.0
5,877,621	+		PP_5151	0.60	+0.2
5,877,621	+		PP_5151	0.60	-0.6
5,877,621	+		PP_5151	0.60	+0.7
5,877,622	-		PP_5151	0.60	+0.1
5,877,622	-		PP_5151	0.60	-2.0
5,877,622	-		PP_5151	0.60	+0.0
5,877,622	-		PP_5151	0.60	-0.5
5,877,622	-		PP_5151	0.60	-1.7
5,877,622	-		PP_5151	0.60	+1.2
5,877,622	-		PP_5151	0.60	-0.2
5,877,639	+		PP_5151	0.62	+1.5
5,877,639	+		PP_5151	0.62	+0.6
5,877,640	-		PP_5151	0.62	-0.7