Strain Fitness in Pseudomonas putida KT2440 around PP_5141

Experiment: 3-methyl-1-butanol 0.1 vol% (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-1-butanol 0.1 vol% (C)
5,866,203	+				-0.5
5,866,288	+		PP_5140	0.12	+0.6
5,866,288	+		PP_5140	0.12	-2.4
5,866,291	+		PP_5140	0.13	-1.4
5,866,292	-		PP_5140	0.13	-0.4
5,866,292	-		PP_5140	0.13	-0.5
5,866,339	+				+0.0
5,866,340	-		PP_5140	0.24	+1.7
5,866,349	-		PP_5140	0.26	+0.7
5,866,724	+				-0.9
5,866,725	-				-0.0
5,866,725	-				-0.7
5,866,732	+				+0.3
5,866,732	+				+1.1
5,866,732	+				-0.8
5,866,732	+				-0.6
5,867,775	-				+1.1
5,867,787	-				-0.5
5,867,787	-				+0.5
5,867,789	-				-0.7
5,867,789	-				-1.0