Strain Fitness in Pseudomonas putida KT2440 around PP_5085

Experiment: 3-methyl-1-butanol 0.1 vol% (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-1-butanol 0.1 vol% (C)
5,807,032	+		PP_5084	0.66	+1.3
5,807,032	+		PP_5084	0.66	+2.3
5,807,032	+		PP_5084	0.66	-1.9
5,807,032	+		PP_5084	0.66	-1.9
5,807,032	+		PP_5084	0.66	-0.7
5,807,033	-		PP_5084	0.66	+1.0
5,807,033	-		PP_5084	0.66	+0.5
5,807,033	-		PP_5084	0.66	-2.2
5,807,155	+		PP_5084	0.71	-1.0
5,807,155	+		PP_5084	0.71	+0.8
5,807,155	+		PP_5084	0.71	-3.2
5,807,156	-		PP_5084	0.71	-2.1
5,807,156	-		PP_5084	0.71	-1.3
5,807,171	-		PP_5084	0.72	+0.0
5,807,385	+		PP_5084	0.80	-1.9
5,807,386	-		PP_5084	0.80	-1.2
5,807,392	+		PP_5084	0.81	+1.1
5,807,392	+		PP_5084	0.81	-1.7
5,807,392	+		PP_5084	0.81	-1.2
5,807,392	+		PP_5084	0.81	-1.6
5,807,392	+		PP_5084	0.81	-2.4
5,807,393	-		PP_5084	0.81	-0.5
5,807,393	-		PP_5084	0.81	-1.8
5,807,393	-		PP_5084	0.81	+1.9
5,807,393	-		PP_5084	0.81	-2.9
5,807,393	-		PP_5084	0.81	-1.0
5,807,524	+		PP_5084	0.86	-1.0
5,807,524	+		PP_5084	0.86	-0.5
5,807,525	-		PP_5084	0.86	-0.1
5,807,525	-		PP_5084	0.86	+0.1
5,807,536	+		PP_5084	0.87	-0.2
5,807,537	-		PP_5084	0.87	-1.3
5,807,537	-		PP_5084	0.87	-2.8
5,807,749	+				-1.8
5,807,863	+				-0.2
5,807,864	-				-1.8
5,807,864	-				-2.4
5,807,864	-				+0.8
5,808,003	+				+1.6
5,808,165	+		PP_5085	0.11	-2.1
5,808,165	+		PP_5085	0.11	-0.6
5,808,165	+		PP_5085	0.11	-1.2
5,808,165	+		PP_5085	0.11	-2.3
5,808,165	+		PP_5085	0.11	-2.4
5,808,166	-		PP_5085	0.12	-2.9
5,808,198	+		PP_5085	0.14	+0.0
5,808,283	+		PP_5085	0.21	-1.5
5,808,283	+		PP_5085	0.21	-2.0
5,808,284	-		PP_5085	0.21	-1.3
5,808,284	-		PP_5085	0.21	-3.4
5,808,284	-		PP_5085	0.21	-3.2
5,808,515	+		PP_5085	0.39	-0.5
5,808,515	+		PP_5085	0.39	-1.2
5,808,515	+		PP_5085	0.39	-1.9
5,808,516	-		PP_5085	0.39	-1.4
5,808,516	-		PP_5085	0.39	-1.3
5,808,588	+		PP_5085	0.45	-2.7
5,808,589	-		PP_5085	0.45	-0.8
5,808,589	-		PP_5085	0.45	-3.1
5,808,628	+		PP_5085	0.48	-1.2
5,808,628	+		PP_5085	0.48	-2.2
5,808,628	+		PP_5085	0.48	+0.0
5,808,671	+		PP_5085	0.51	-3.5
5,808,671	+		PP_5085	0.51	-2.4
5,808,672	-		PP_5085	0.51	-2.8
5,808,672	-		PP_5085	0.51	+0.4
5,808,672	-		PP_5085	0.51	-0.6
5,808,797	-		PP_5085	0.61	-2.4
5,808,847	+		PP_5085	0.65	-2.8
5,809,114	-		PP_5085	0.86	-0.2
5,809,119	+		PP_5085	0.87	+0.6
5,809,119	+		PP_5085	0.87	+1.5
5,809,120	-		PP_5085	0.87	-1.7
5,809,307	+				-3.5
5,809,307	+				-0.4
5,809,307	+				-2.2
5,809,307	+				-0.6
5,809,307	+				+0.9
5,809,308	-				-1.2
5,809,308	-				+2.0
5,809,308	-				+0.1
5,809,308	-				+1.3
5,809,333	-				+0.3
5,809,386	+				+1.6
5,809,391	+				+0.6
5,809,400	-				+0.4
5,809,400	-				+0.2
5,809,420	+				-0.5
5,809,420	+				+1.0
5,809,421	-				+0.3
5,809,702	+		PP_5086	0.31	-0.3
5,809,711	+		PP_5086	0.32	-0.4
5,809,763	+		PP_5086	0.39	-1.0
5,809,841	+		PP_5086	0.49	+3.2
5,809,841	+		PP_5086	0.49	-1.8
5,809,841	+		PP_5086	0.49	+0.8
5,809,841	+		PP_5086	0.49	+0.5
5,809,842	-		PP_5086	0.49	-1.8
5,809,846	+		PP_5086	0.49	-3.2
5,809,846	+		PP_5086	0.49	+0.0
5,809,847	-		PP_5086	0.50	+0.8
5,809,883	-		PP_5086	0.54	-2.6
5,809,920	+		PP_5086	0.59	-3.3
5,809,920	+		PP_5086	0.59	+0.4
5,809,920	+		PP_5086	0.59	+0.0
5,809,921	-		PP_5086	0.59	+0.5
5,809,921	-		PP_5086	0.59	-0.2
5,809,921	-		PP_5086	0.59	-0.6
5,809,944	+		PP_5086	0.62	-1.1
5,809,944	+		PP_5086	0.62	+0.4
5,809,944	+		PP_5086	0.62	-3.2
5,809,944	+		PP_5086	0.62	-0.5
5,809,945	-		PP_5086	0.62	+0.0
5,809,945	-		PP_5086	0.62	+0.4
5,809,945	-		PP_5086	0.62	+0.6
5,809,945	-		PP_5086	0.62	+0.7
5,809,945	-		PP_5086	0.62	+0.0
5,809,954	+		PP_5086	0.64	+0.4
5,810,037	+		PP_5086	0.74	+0.5
5,810,050	+		PP_5086	0.76	-0.4
5,810,051	-		PP_5086	0.76	-1.3
5,810,051	-		PP_5086	0.76	-2.2