Strain Fitness in Pseudomonas putida KT2440 around PP_4985

Experiment: 3-methyl-1-butanol 0.1 vol% (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_4984 and PP_4985 are separated by 163 nucleotidesPP_4985 and PP_4986 are separated by 0 nucleotidesPP_4986 and PP_4987 are separated by 203 nucleotides PP_4984: PP_4984 - Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, at 5,678,375 to 5,679,781 _4984 PP_4985: PP_4985 - 16S rRNA m3U1498 methyltransferase, at 5,679,945 to 5,680,664 _4985 PP_4986: PP_4986 - Channel protein, hemolysin III family, at 5,680,665 to 5,681,282 _4986 PP_4987: PP_4987 - putative Chemotaxis protein, at 5,681,486 to 5,681,959 _4987 Position (kb) 5679 5680 5681Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 5679.045 kb on + strand, within PP_4984at 5679.045 kb on + strand, within PP_4984at 5679.046 kb on - strand, within PP_4984at 5679.071 kb on + strand, within PP_4984at 5679.071 kb on + strand, within PP_4984at 5679.071 kb on + strand, within PP_4984at 5679.071 kb on + strand, within PP_4984at 5679.071 kb on + strand, within PP_4984at 5679.083 kb on + strand, within PP_4984at 5679.117 kb on - strand, within PP_4984at 5679.131 kb on - strand, within PP_4984at 5679.243 kb on - strand, within PP_4984at 5679.282 kb on - strand, within PP_4984at 5679.293 kb on + strand, within PP_4984at 5679.293 kb on + strand, within PP_4984at 5679.338 kb on + strand, within PP_4984at 5679.338 kb on + strand, within PP_4984at 5679.339 kb on - strand, within PP_4984at 5679.339 kb on - strand, within PP_4984at 5679.486 kb on + strand, within PP_4984at 5679.548 kb on + strand, within PP_4984at 5679.548 kb on + strand, within PP_4984at 5679.635 kb on + strand, within PP_4984at 5679.635 kb on + strand, within PP_4984at 5679.636 kb on - strand, within PP_4984at 5679.636 kb on - strand, within PP_4984at 5679.651 kb on - strandat 5679.741 kb on + strandat 5679.927 kb on + strandat 5679.927 kb on + strandat 5679.927 kb on + strandat 5679.927 kb on + strandat 5679.927 kb on + strandat 5679.928 kb on - strandat 5679.932 kb on - strandat 5680.021 kb on - strand, within PP_4985at 5680.021 kb on - strand, within PP_4985at 5680.021 kb on - strand, within PP_4985at 5680.090 kb on - strand, within PP_4985at 5680.090 kb on - strand, within PP_4985at 5680.090 kb on - strand, within PP_4985at 5680.257 kb on + strand, within PP_4985at 5680.377 kb on - strand, within PP_4985at 5680.377 kb on - strand, within PP_4985at 5680.532 kb on + strand, within PP_4985at 5680.533 kb on - strand, within PP_4985at 5680.666 kb on + strandat 5680.667 kb on - strandat 5680.675 kb on + strandat 5680.789 kb on + strand, within PP_4986at 5680.790 kb on - strand, within PP_4986at 5680.888 kb on + strand, within PP_4986at 5680.888 kb on + strand, within PP_4986at 5680.888 kb on + strand, within PP_4986at 5680.889 kb on - strand, within PP_4986at 5680.889 kb on - strand, within PP_4986at 5681.026 kb on + strand, within PP_4986at 5681.027 kb on - strand, within PP_4986at 5681.027 kb on - strand, within PP_4986at 5681.048 kb on - strand, within PP_4986at 5681.048 kb on - strand, within PP_4986at 5681.125 kb on + strand, within PP_4986at 5681.125 kb on + strand, within PP_4986at 5681.125 kb on + strand, within PP_4986at 5681.125 kb on + strand, within PP_4986at 5681.149 kb on + strand, within PP_4986at 5681.223 kb on - strandat 5681.275 kb on + strandat 5681.276 kb on - strandat 5681.278 kb on + strandat 5681.278 kb on + strandat 5681.278 kb on + strandat 5681.278 kb on + strandat 5681.279 kb on - strandat 5681.279 kb on - strandat 5681.488 kb on - strandat 5681.617 kb on - strand, within PP_4987

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Per-strain Table

Position Strand Gene LocusTag Fraction 3-methyl-1-butanol 0.1 vol% (C)
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5,679,045 + PP_4984 0.48 -2.8
5,679,045 + PP_4984 0.48 -3.3
5,679,046 - PP_4984 0.48 -4.3
5,679,071 + PP_4984 0.49 -2.9
5,679,071 + PP_4984 0.49 -4.1
5,679,071 + PP_4984 0.49 -2.5
5,679,071 + PP_4984 0.49 -1.6
5,679,071 + PP_4984 0.49 -4.3
5,679,083 + PP_4984 0.50 -2.4
5,679,117 - PP_4984 0.53 -2.9
5,679,131 - PP_4984 0.54 -2.8
5,679,243 - PP_4984 0.62 -4.0
5,679,282 - PP_4984 0.64 -2.4
5,679,293 + PP_4984 0.65 -2.8
5,679,293 + PP_4984 0.65 -2.6
5,679,338 + PP_4984 0.68 -3.9
5,679,338 + PP_4984 0.68 -3.2
5,679,339 - PP_4984 0.69 -3.3
5,679,339 - PP_4984 0.69 -1.9
5,679,486 + PP_4984 0.79 -2.4
5,679,548 + PP_4984 0.83 -4.3
5,679,548 + PP_4984 0.83 -3.7
5,679,635 + PP_4984 0.90 -3.2
5,679,635 + PP_4984 0.90 -3.7
5,679,636 - PP_4984 0.90 -4.3
5,679,636 - PP_4984 0.90 -4.1
5,679,651 - -3.2
5,679,741 + -1.8
5,679,927 + -0.1
5,679,927 + -0.8
5,679,927 + -0.6
5,679,927 + +0.4
5,679,927 + -0.4
5,679,928 - -1.3
5,679,932 - +0.1
5,680,021 - PP_4985 0.11 +1.6
5,680,021 - PP_4985 0.11 +1.2
5,680,021 - PP_4985 0.11 +0.3
5,680,090 - PP_4985 0.20 +0.4
5,680,090 - PP_4985 0.20 +1.9
5,680,090 - PP_4985 0.20 +0.7
5,680,257 + PP_4985 0.43 +1.9
5,680,377 - PP_4985 0.60 -1.2
5,680,377 - PP_4985 0.60 +0.0
5,680,532 + PP_4985 0.82 +1.0
5,680,533 - PP_4985 0.82 +0.5
5,680,666 + -0.3
5,680,667 - -1.8
5,680,675 + -0.9
5,680,789 + PP_4986 0.20 +0.7
5,680,790 - PP_4986 0.20 +2.1
5,680,888 + PP_4986 0.36 -0.7
5,680,888 + PP_4986 0.36 -0.5
5,680,888 + PP_4986 0.36 -0.4
5,680,889 - PP_4986 0.36 +0.2
5,680,889 - PP_4986 0.36 +1.4
5,681,026 + PP_4986 0.58 -0.3
5,681,027 - PP_4986 0.59 +0.5
5,681,027 - PP_4986 0.59 -0.6
5,681,048 - PP_4986 0.62 -0.3
5,681,048 - PP_4986 0.62 +1.0
5,681,125 + PP_4986 0.74 -1.4
5,681,125 + PP_4986 0.74 -1.5
5,681,125 + PP_4986 0.74 +1.2
5,681,125 + PP_4986 0.74 -2.7
5,681,149 + PP_4986 0.78 +0.4
5,681,223 - +0.3
5,681,275 + +1.4
5,681,276 - -0.9
5,681,278 + -0.3
5,681,278 + +0.6
5,681,278 + +0.2
5,681,278 + -2.2
5,681,279 - -1.2
5,681,279 - -0.2
5,681,488 - -1.9
5,681,617 - PP_4987 0.28 +1.6

Or see this region's nucleotide sequence