Strain Fitness in Pseudomonas putida KT2440 around PP_4984

Experiment: 3-methyl-1-butanol 0.1 vol% (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-1-butanol 0.1 vol% (C)
5,677,388	+		PP_4983	0.67	+1.2
5,677,413	-		PP_4983	0.68	-0.6
5,677,671	-		PP_4983	0.82	-1.6
5,677,671	-		PP_4983	0.82	+0.7
5,677,699	-		PP_4983	0.84	-0.4
5,677,748	+		PP_4983	0.86	-0.2
5,677,874	+				+0.6
5,677,969	+				+0.4
5,678,029	+				-0.4
5,678,071	+				+1.0
5,678,077	+				+2.2
5,678,077	+				+0.7
5,678,077	+				-0.1
5,678,077	+				-1.1
5,678,078	-				-0.3
5,678,134	+				+2.0
5,678,134	+				+0.5
5,678,147	-				+0.8
5,678,150	+				+0.7
5,678,150	+				-0.1
5,678,150	+				-0.6
5,678,150	+				-1.6
5,678,151	-				-0.6
5,678,151	-				+1.0
5,678,163	-				+0.8
5,678,329	+				-0.4
5,678,329	+				-1.4
5,678,330	-				-1.2
5,678,335	+				-0.2
5,678,336	-				-0.4
5,678,708	+		PP_4984	0.24	-3.5
5,678,763	-		PP_4984	0.28	-3.2
5,678,819	+		PP_4984	0.32	-4.7
5,678,820	-		PP_4984	0.32	-3.0
5,678,880	-		PP_4984	0.36	-3.7
5,678,880	-		PP_4984	0.36	-3.3
5,679,045	+		PP_4984	0.48	-2.8
5,679,045	+		PP_4984	0.48	-3.3
5,679,046	-		PP_4984	0.48	-4.3
5,679,071	+		PP_4984	0.49	-2.9
5,679,071	+		PP_4984	0.49	-4.1
5,679,071	+		PP_4984	0.49	-2.5
5,679,071	+		PP_4984	0.49	-1.6
5,679,071	+		PP_4984	0.49	-4.3
5,679,083	+		PP_4984	0.50	-2.4
5,679,117	-		PP_4984	0.53	-2.9
5,679,131	-		PP_4984	0.54	-2.8
5,679,243	-		PP_4984	0.62	-4.0
5,679,282	-		PP_4984	0.64	-2.4
5,679,293	+		PP_4984	0.65	-2.8
5,679,293	+		PP_4984	0.65	-2.6
5,679,338	+		PP_4984	0.68	-3.9
5,679,338	+		PP_4984	0.68	-3.2
5,679,339	-		PP_4984	0.69	-3.3
5,679,339	-		PP_4984	0.69	-1.9
5,679,486	+		PP_4984	0.79	-2.4
5,679,548	+		PP_4984	0.83	-4.3
5,679,548	+		PP_4984	0.83	-3.7
5,679,635	+		PP_4984	0.90	-3.2
5,679,635	+		PP_4984	0.90	-3.7
5,679,636	-		PP_4984	0.90	-4.3
5,679,636	-		PP_4984	0.90	-4.1
5,679,651	-				-3.2
5,679,741	+				-1.8
5,679,927	+				-0.1
5,679,927	+				-0.8
5,679,927	+				-0.6
5,679,927	+				+0.4
5,679,927	+				-0.4
5,679,928	-				-1.3
5,679,932	-				+0.1
5,680,021	-		PP_4985	0.11	+1.6
5,680,021	-		PP_4985	0.11	+1.2
5,680,021	-		PP_4985	0.11	+0.3
5,680,090	-		PP_4985	0.20	+0.4
5,680,090	-		PP_4985	0.20	+1.9
5,680,090	-		PP_4985	0.20	+0.7
5,680,257	+		PP_4985	0.43	+1.9
5,680,377	-		PP_4985	0.60	-1.2
5,680,377	-		PP_4985	0.60	+0.0
5,680,532	+		PP_4985	0.82	+1.0
5,680,533	-		PP_4985	0.82	+0.5
5,680,666	+				-0.3
5,680,667	-				-1.8
5,680,675	+				-0.9