Strain Fitness in Pseudomonas putida KT2440 around PP_4961

Experiment: 3-methyl-1-butanol 0.1 vol% (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_4960 and PP_4961 are separated by 100 nucleotidesPP_4961 and PP_4962 are separated by 160 nucleotidesPP_4962 and PP_4963 overlap by 1 nucleotides PP_4960: PP_4960 - Fructose-bisphosphate aldolase, at 5,651,405 to 5,652,469 _4960 PP_4961: PP_4961 - putative Lipoprotein, at 5,652,570 to 5,652,899 _4961 PP_4962: PP_4962 - conserved exported protein of unknown function, at 5,653,060 to 5,653,311 _4962 PP_4963: PP_4963 - Phosphoglycerate kinase, at 5,653,311 to 5,654,474 _4963 Position (kb) 5652 5653Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5652.620 kb on - strand, within PP_4961at 5652.710 kb on - strand, within PP_4961at 5652.960 kb on + strandat 5652.961 kb on - strandat 5652.961 kb on - strandat 5653.050 kb on + strandat 5653.050 kb on + strandat 5653.050 kb on + strandat 5653.051 kb on - strandat 5653.173 kb on - strand, within PP_4962

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Per-strain Table

Position Strand Gene LocusTag Fraction 3-methyl-1-butanol 0.1 vol% (C)
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5,652,620 - PP_4961 0.15 -1.9
5,652,710 - PP_4961 0.42 -2.8
5,652,960 + +2.0
5,652,961 - -2.0
5,652,961 - -2.3
5,653,050 + +2.1
5,653,050 + +1.2
5,653,050 + +1.4
5,653,051 - -2.3
5,653,173 - PP_4962 0.45 +0.4

Or see this region's nucleotide sequence