Strain Fitness in Pseudomonas putida KT2440 around PP_4889

Experiment: 3-methyl-1-butanol 0.1 vol% (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-1-butanol 0.1 vol% (C)
5,556,975	+		PP_4888	0.66	+0.5
5,556,976	-		PP_4888	0.66	+1.4
5,557,023	+		PP_4888	0.69	-0.0
5,557,023	+		PP_4888	0.69	-0.7
5,557,023	+		PP_4888	0.69	-1.8
5,557,023	+		PP_4888	0.69	-0.3
5,557,040	+		PP_4888	0.70	+0.1
5,557,146	-		PP_4888	0.75	+0.2
5,557,178	+		PP_4888	0.77	-2.1
5,557,179	-		PP_4888	0.77	-0.4
5,557,179	-		PP_4888	0.77	-0.3
5,557,336	+		PP_4888	0.85	+0.0
5,557,337	-		PP_4888	0.85	-0.5
5,557,337	-		PP_4888	0.85	-0.7
5,557,337	-		PP_4888	0.85	+0.2
5,557,337	-		PP_4888	0.85	+0.3
5,557,566	+				-0.5
5,557,567	-				+0.2
5,557,606	+				+0.2
5,557,674	+				-2.3
5,557,675	-				+0.6
5,557,688	-				-1.9
5,557,734	-				-0.3
5,557,734	-				-0.3
5,557,734	-				-1.1
5,557,781	+				-0.8
5,557,781	+				+1.0
5,557,782	-				+0.9
5,557,782	-				-1.6
5,557,782	-				+0.3
5,557,819	+				+0.6
5,557,820	-				+0.1
5,557,841	+				-2.4
5,557,842	-				-1.3
5,559,674	-		PP_4890	0.31	-4.7
5,559,674	-		PP_4890	0.31	-3.1
5,559,992	-		PP_4890	0.57	-1.4
5,560,103	-		PP_4890	0.67	-4.1
5,560,103	-		PP_4890	0.67	-2.9
5,560,103	-		PP_4890	0.67	-4.9