Strain Fitness in Pseudomonas putida KT2440 around PP_4832

Experiment: 3-methyl-1-butanol 0.1 vol% (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-1-butanol 0.1 vol% (C)
5,498,390	+		PP_4831	0.24	+0.1
5,498,390	+		PP_4831	0.24	-1.7
5,498,390	+		PP_4831	0.24	-0.1
5,498,390	+		PP_4831	0.24	-0.8
5,498,391	-		PP_4831	0.24	-3.7
5,498,392	+		PP_4831	0.24	-2.1
5,498,705	+		PP_4831	0.52	-2.4
5,498,706	-		PP_4831	0.52	-0.9
5,498,706	-		PP_4831	0.52	-2.7
5,498,753	+		PP_4831	0.57	-1.2
5,498,754	-		PP_4831	0.57	+0.3
5,498,763	+		PP_4831	0.58	-1.3
5,498,764	-		PP_4831	0.58	-3.3
5,498,764	-		PP_4831	0.58	-3.5
5,498,811	-		PP_4831	0.62	-2.7
5,499,302	-		PP_4832	0.11	-2.9
5,499,302	-		PP_4832	0.11	-2.7
5,499,302	-		PP_4832	0.11	-1.5
5,499,302	-		PP_4832	0.11	-2.8
5,499,391	+		PP_4832	0.23	-3.5
5,499,439	+		PP_4832	0.30	-2.0
5,499,440	-		PP_4832	0.30	-1.8
5,499,440	-		PP_4832	0.30	-2.5
5,499,440	-		PP_4832	0.30	-1.7
5,499,940	+				+0.1
5,499,974	+				-0.6
5,499,974	+				+1.9
5,499,974	+				-0.1
5,500,035	-				+0.3
5,500,071	-				-0.4
5,500,151	-		PP_4833	0.17	+0.7
5,500,151	-		PP_4833	0.17	+0.2
5,500,187	+		PP_4833	0.25	+0.2
5,500,187	+		PP_4833	0.25	-1.1
5,500,187	+		PP_4833	0.25	+0.1
5,500,241	-		PP_4833	0.38	+0.5
5,500,517	+				+1.7
5,500,518	-				-0.9
5,500,691	+		PP_4834	0.18	-1.4
5,500,691	+		PP_4834	0.18	-0.7
5,500,691	+		PP_4834	0.18	+0.0
5,500,812	+		PP_4834	0.32	+2.6
5,500,813	-		PP_4834	0.33	+0.2
5,500,813	-		PP_4834	0.33	-0.9
5,500,813	-		PP_4834	0.33	-1.1
5,500,835	+		PP_4834	0.35	+1.9
5,500,835	+		PP_4834	0.35	+0.9
5,500,835	+		PP_4834	0.35	+0.3
5,500,835	+		PP_4834	0.35	-1.2
5,500,835	+		PP_4834	0.35	+0.4
5,500,835	+		PP_4834	0.35	+1.6
5,500,835	+		PP_4834	0.35	+0.5
5,500,836	-		PP_4834	0.35	-0.4
5,500,836	-		PP_4834	0.35	+0.7
5,500,836	-		PP_4834	0.35	-0.5
5,500,836	-		PP_4834	0.35	-1.4