Strain Fitness in Pseudomonas putida KT2440 around PP_4828

Experiment: 3-methyl-1-butanol 0.1 vol% (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-1-butanol 0.1 vol% (C)
5,493,854	-				-3.2
5,493,940	+				-0.5
5,493,940	+				-2.7
5,494,046	+				-0.6
5,494,118	+		PP_4827	0.16	-2.3
5,494,118	+		PP_4827	0.16	-3.0
5,494,119	-		PP_4827	0.16	+1.0
5,494,119	-		PP_4827	0.16	-2.1
5,494,119	-		PP_4827	0.16	+0.9
5,494,119	-		PP_4827	0.16	-3.6
5,494,119	-		PP_4827	0.16	-2.7
5,494,119	-				-1.0
5,494,119	-		PP_4827	0.16	-1.5
5,494,275	+		PP_4827	0.37	-2.8
5,494,379	+		PP_4827	0.51	-1.5
5,494,379	+		PP_4827	0.51	-2.6
5,494,379	+		PP_4827	0.51	-3.3
5,494,379	+		PP_4827	0.51	-1.0
5,494,379	+		PP_4827	0.51	-2.0
5,494,379	+		PP_4827	0.51	-3.0
5,494,379	+		PP_4827	0.51	-3.7
5,494,379	+		PP_4827	0.51	-2.6
5,494,380	-		PP_4827	0.51	-2.5
5,494,380	-		PP_4827	0.51	-3.4
5,494,380	-		PP_4827	0.51	-2.0
5,494,380	-		PP_4827	0.51	-3.4
5,494,380	-		PP_4827	0.51	-1.7
5,494,380	-		PP_4827	0.51	-1.7
5,494,385	+		PP_4827	0.52	-3.4
5,494,385	+		PP_4827	0.52	-2.8
5,494,385	+		PP_4827	0.52	+0.0
5,494,385	+		PP_4827	0.52	-4.1
5,494,385	+		PP_4827	0.52	-3.5
5,494,385	+		PP_4827	0.52	-3.6
5,494,385	+		PP_4827	0.52	-1.7
5,494,385	+		PP_4827	0.52	-0.1
5,494,385	+		PP_4827	0.52	-0.0
5,494,386	-		PP_4827	0.52	-2.3
5,494,386	-		PP_4827	0.52	-0.7
5,494,386	-		PP_4827	0.52	-0.5
5,494,386	-		PP_4827	0.52	-3.4
5,494,386	-		PP_4827	0.52	-3.3
5,494,386	-		PP_4827	0.52	-3.5
5,494,394	+		PP_4827	0.53	-2.8
5,494,395	-		PP_4827	0.53	-1.5
5,494,395	-		PP_4827	0.53	-1.6
5,494,462	+		PP_4827	0.62	+0.1
5,494,462	+		PP_4827	0.62	-2.5
5,494,462	+		PP_4827	0.62	-4.4
5,494,463	-		PP_4827	0.63	-1.1
5,494,463	-		PP_4827	0.63	-3.0
5,494,463	-		PP_4827	0.63	-3.3
5,494,467	+		PP_4827	0.63	-1.1
5,494,467	+		PP_4827	0.63	-1.6
5,494,478	+		PP_4827	0.65	-1.3
5,494,479	-		PP_4827	0.65	-2.1
5,494,503	-		PP_4827	0.68	-2.6
5,494,503	-		PP_4827	0.68	-4.2
5,494,503	-		PP_4827	0.68	-1.7
5,494,503	-		PP_4827	0.68	-1.7
5,494,588	-		PP_4827	0.80	-3.1
5,494,628	+		PP_4827	0.85	-2.7
5,494,937	-		PP_4828	0.32	-1.7
5,495,011	-		PP_4828	0.44	-2.5
5,495,326	+				-2.9
5,495,327	-				-0.7
5,495,327	-				-1.5
5,495,351	-				-2.7
5,495,410	-				-3.1
5,495,462	+				-1.0
5,495,462	+				-3.1
5,495,462	+				-0.1
5,495,463	-				-1.6
5,495,658	+		PP_4829	0.23	-2.5
5,495,659	-		PP_4829	0.23	-3.1
5,495,808	+		PP_4829	0.34	-2.0
5,495,808	+		PP_4829	0.34	-3.3
5,495,996	+		PP_4829	0.48	-2.6
5,495,996	+		PP_4829	0.48	-1.3