Strain Fitness in Pseudomonas putida KT2440 around PP_4763

Experiment: 3-methyl-1-butanol 0.1 vol% (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-1-butanol 0.1 vol% (C)
5,421,980	+		PP_4762	0.15	-3.4
5,421,981	-		PP_4762	0.15	-1.4
5,421,981	-		PP_4762	0.15	-1.9
5,422,119	-		PP_4762	0.31	-0.2
5,422,130	+		PP_4762	0.32	-1.6
5,422,131	-		PP_4762	0.32	-0.7
5,422,184	+		PP_4762	0.38	-0.5
5,422,185	-		PP_4762	0.39	-2.7
5,422,185	-		PP_4762	0.39	-3.4
5,422,391	+		PP_4762	0.62	-1.2
5,422,392	-		PP_4762	0.62	-1.2
5,422,455	+		PP_4762	0.70	-2.0
5,422,532	+		PP_4762	0.78	+1.3
5,422,617	-		PP_4762	0.88	-1.0
5,422,617	-		PP_4762	0.88	-1.3
5,422,617	-		PP_4762	0.88	-2.2
5,422,644	+				-1.1
5,422,645	-				-3.5
5,422,645	-				-0.7
5,422,733	+				+0.6
5,422,734	-				+0.6
5,422,745	+				-4.0
5,422,746	-				-0.1
5,422,800	-				+0.2
5,422,820	+				-2.2
5,422,820	+				-2.7
5,422,831	+				-1.4
5,423,477	+				-1.8
5,423,478	-				+1.1
5,423,600	-				-0.9
5,423,759	+		PP_5712	0.20	-2.3
5,423,759	+		PP_5712	0.20	+0.3
5,423,995	+		PP_5712	0.55	-0.7
5,424,022	+		PP_5712	0.59	+0.8
5,424,023	-		PP_5712	0.59	-0.8
5,424,198	+		PP_5712	0.84	-1.3
5,424,199	-		PP_5712	0.84	-0.8
5,424,199	-		PP_5712	0.84	-0.9
5,424,283	+				-0.3
5,424,284	-				-0.2
5,424,284	-				-0.7
5,424,303	+				+0.0
5,424,303	+				-0.2
5,424,304	-				+0.1
5,424,304	-				-0.0
5,424,304	-				-1.2
5,424,341	-				+0.3
5,424,341	-				-1.1