Strain Fitness in Pseudomonas putida KT2440 around PP_4761

Experiment: 3-methyl-1-butanol 0.1 vol% (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-1-butanol 0.1 vol% (C)
5,420,467	+		PP_4760	0.37	-0.7
5,420,467	+		PP_4760	0.37	-1.9
5,420,468	-		PP_4760	0.38	+0.5
5,420,971	+		PP_4760	0.87	-0.5
5,420,972	-		PP_4760	0.87	+0.3
5,421,075	+				-0.4
5,421,075	+				+0.8
5,421,076	-				+1.5
5,421,076	-				+1.9
5,421,079	+				+1.4
5,421,079	+				-1.0
5,421,079	+				-1.2
5,421,079	+				-0.6
5,421,080	-				+0.3
5,421,080	-				-0.4
5,421,140	-				-0.1
5,421,211	-				+0.1
5,421,584	-		PP_4761	0.54	+1.8
5,421,980	+		PP_4762	0.15	-3.4
5,421,981	-		PP_4762	0.15	-1.4
5,421,981	-		PP_4762	0.15	-1.9
5,422,119	-		PP_4762	0.31	-0.2
5,422,130	+		PP_4762	0.32	-1.6
5,422,131	-		PP_4762	0.32	-0.7
5,422,184	+		PP_4762	0.38	-0.5
5,422,185	-		PP_4762	0.39	-2.7
5,422,185	-		PP_4762	0.39	-3.4
5,422,391	+		PP_4762	0.62	-1.2
5,422,392	-		PP_4762	0.62	-1.2
5,422,455	+		PP_4762	0.70	-2.0
5,422,532	+		PP_4762	0.78	+1.3
5,422,617	-		PP_4762	0.88	-1.0
5,422,617	-		PP_4762	0.88	-1.3
5,422,617	-		PP_4762	0.88	-2.2
5,422,644	+				-1.1
5,422,645	-				-3.5
5,422,645	-				-0.7
5,422,733	+				+0.6
5,422,734	-				+0.6
5,422,745	+				-4.0
5,422,746	-				-0.1
5,422,800	-				+0.2
5,422,820	+				-2.2
5,422,820	+				-2.7
5,422,831	+				-1.4