Strain Fitness in Pseudomonas putida KT2440 around PP_4723

Experiment: 3-methyl-1-butanol 0.1 vol% (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-1-butanol 0.1 vol% (C)
5,367,779	+				-1.9
5,367,779	+				+0.1
5,367,780	-				-1.6
5,367,780	-				-0.2
5,367,780	-				+0.3
5,367,791	+				+0.9
5,367,791	+				+0.4
5,367,791	+				+0.0
5,367,792	-				+1.2
5,367,792	-				+0.6
5,367,792	-				+1.6
5,367,927	+		PP_4721	0.27	-1.2
5,367,927	+		PP_4721	0.27	+0.6
5,367,927	+		PP_4721	0.27	-0.6
5,367,927	+		PP_4721	0.27	-0.7
5,367,927	+		PP_4721	0.27	+0.6
5,367,927	+		PP_4721	0.27	+0.2
5,367,928	-		PP_4721	0.27	-2.3
5,367,928	-		PP_4721	0.27	-0.0
5,367,928	-		PP_4721	0.27	-0.1
5,367,928	-		PP_4721	0.27	-1.0
5,367,928	-		PP_4721	0.27	+1.4
5,367,928	-		PP_4721	0.27	-0.7
5,367,928	-		PP_4721	0.27	+0.3
5,367,928	-		PP_4721	0.27	-1.5
5,367,931	-		PP_4721	0.28	-3.4
5,368,272	-				-2.5
5,368,292	+		PP_4722	0.13	-2.7
5,368,292	+		PP_4722	0.13	-1.2
5,368,292	+		PP_4722	0.13	-1.2
5,368,293	-		PP_4722	0.14	+0.4
5,368,293	-		PP_4722	0.14	+0.2
5,368,293	-		PP_4722	0.14	-1.7
5,368,293	-		PP_4722	0.14	+0.0
5,368,390	+		PP_4722	0.34	-1.9
5,368,390	+		PP_4722	0.34	-1.7
5,368,391	-		PP_4722	0.34	+1.8
5,368,391	-		PP_4722	0.34	+0.4
5,368,391	-		PP_4722	0.34	-2.4
5,368,426	-		PP_4722	0.41	-0.8
5,368,561	+		PP_4722	0.69	-2.1
5,368,561	+		PP_4722	0.69	+0.2
5,368,700	+				-0.5
5,368,851	+				+1.8
5,369,194	-		PP_4723	0.15	-3.1
5,369,268	+		PP_4723	0.17	-2.4
5,369,269	-		PP_4723	0.17	-3.2
5,369,269	-		PP_4723	0.17	-3.1
5,369,269	-		PP_4723	0.17	+0.8
5,369,318	-		PP_4723	0.19	-0.5
5,369,418	+		PP_4723	0.22	-2.2
5,369,419	-		PP_4723	0.22	-0.8
5,369,419	-		PP_4723	0.22	-1.5
5,369,465	+		PP_4723	0.23	-0.2
5,369,466	-		PP_4723	0.24	-1.4
5,369,466	-		PP_4723	0.24	-1.0
5,369,535	+		PP_4723	0.26	-1.9
5,369,535	+		PP_4723	0.26	-2.4
5,369,570	+		PP_4723	0.27	-0.8
5,369,571	-		PP_4723	0.27	-1.0
5,369,571	-		PP_4723	0.27	-1.8
5,369,705	+		PP_4723	0.31	-2.7
5,369,705	+		PP_4723	0.31	-0.2
5,369,706	-		PP_4723	0.31	-3.6
5,369,774	+		PP_4723	0.33	-3.7
5,369,774	+		PP_4723	0.33	-2.0
5,369,774	+		PP_4723	0.33	-3.5
5,369,774	+		PP_4723	0.33	-2.5
5,369,774	+		PP_4723	0.33	-1.4
5,369,775	-		PP_4723	0.33	-1.4
5,370,081	+		PP_4723	0.43	-2.9
5,370,103	-		PP_4723	0.43	-2.0
5,370,103	-				-0.2
5,370,183	-		PP_4723	0.46	+0.2
5,370,183	-		PP_4723	0.46	-1.9
5,370,192	+		PP_4723	0.46	-2.6
5,370,289	-		PP_4723	0.49	-1.9
5,370,289	-		PP_4723	0.49	-1.8
5,370,289	-		PP_4723	0.49	-1.5
5,370,298	-		PP_4723	0.49	-2.2
5,370,416	+		PP_4723	0.53	-2.0
5,370,465	+		PP_4723	0.54	-0.8
5,370,465	+		PP_4723	0.54	+0.8
5,370,465	+		PP_4723	0.54	-1.5
5,370,466	-		PP_4723	0.54	-0.8
5,370,466	-		PP_4723	0.54	-2.2
5,370,615	+		PP_4723	0.59	-3.1
5,370,616	-		PP_4723	0.59	-2.1
5,370,622	+		PP_4723	0.59	-3.0
5,370,622	+		PP_4723	0.59	+0.2
5,370,867	+		PP_4723	0.67	-2.6
5,370,867	+		PP_4723	0.67	-2.1
5,370,867	+		PP_4723	0.67	-2.4
5,370,868	-		PP_4723	0.67	-1.2
5,370,939	+		PP_4723	0.69	-2.4
5,370,940	-		PP_4723	0.69	-1.9
5,370,940	-		PP_4723	0.69	+0.8
5,371,281	+		PP_4723	0.80	-1.8
5,371,282	-		PP_4723	0.80	-0.5
5,371,380	+		PP_4723	0.83	-2.1
5,371,381	-		PP_4723	0.83	-2.2
5,371,381	-		PP_4723	0.83	-1.2
5,371,734	+				-1.8
5,371,735	-				-3.3
5,371,845	+				-2.8
5,371,915	+				-2.6
5,372,267	-		PP_4724	0.21	-3.1
5,372,401	-		PP_4724	0.32	-1.5
5,372,421	+		PP_4724	0.34	+1.8
5,372,422	-		PP_4724	0.34	-1.7
5,372,487	-		PP_4724	0.40	-3.2
5,372,574	+		PP_4724	0.48	-2.2
5,372,574	+		PP_4724	0.48	+0.2
5,372,596	-		PP_4724	0.50	-2.4
5,372,596	-		PP_4724	0.50	-1.2
5,372,667	+		PP_4724	0.56	-0.2
5,372,809	+		PP_4724	0.68	-1.4
5,372,891	-		PP_4724	0.75	-2.1