Strain Fitness in Pseudomonas putida KT2440 around PP_4702

Experiment: 3-methyl-1-butanol 0.1 vol% (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-1-butanol 0.1 vol% (C)
5,344,399	+				-0.0
5,344,480	-				-0.0
5,344,480	-				+0.0
5,344,487	-				-0.2
5,344,540	+				-0.2
5,344,540	+				+0.8
5,344,540	+				-0.1
5,344,540	+				-0.2
5,344,541	-				-0.6
5,344,541	-				+0.7
5,344,541	-				-2.8
5,344,551	-				+0.8
5,344,551	-				-1.4
5,344,581	+				-0.7
5,344,581	+				+0.7
5,344,582	-				+0.9
5,344,582	-				-1.0
5,344,582	-				+0.7
5,344,582	-				+0.2
5,344,622	-				+0.7
5,344,673	-				-0.5
5,344,831	+		PP_4702	0.12	+0.2
5,344,831	+		PP_4702	0.12	-0.0
5,344,831	+		PP_4702	0.12	-1.1
5,344,925	-		PP_4702	0.17	-0.8
5,345,000	+		PP_4702	0.21	+0.7
5,345,008	+		PP_4702	0.21	-3.0
5,345,008	+		PP_4702	0.21	-0.4
5,345,008	+		PP_4702	0.21	-0.5
5,345,008	+		PP_4702	0.21	-0.4
5,345,008	+		PP_4702	0.21	-0.1
5,345,009	-		PP_4702	0.21	-1.4
5,345,235	+		PP_4702	0.33	+0.0
5,345,377	+		PP_4702	0.40	-1.8
5,345,377	+		PP_4702	0.40	+0.4
5,345,377	+		PP_4702	0.40	+0.9
5,345,378	-		PP_4702	0.40	-0.2
5,345,378	-		PP_4702	0.40	-1.6
5,345,378	-		PP_4702	0.40	+0.7
5,345,418	+		PP_4702	0.42	-0.4
5,345,419	-		PP_4702	0.42	-0.6
5,345,419	-		PP_4702	0.42	+0.1
5,345,419	-		PP_4702	0.42	+0.8
5,345,471	-		PP_4702	0.45	-1.4
5,345,533	+		PP_4702	0.48	-0.2
5,345,533	+		PP_4702	0.48	+0.8
5,345,533	+		PP_4702	0.48	-0.2
5,345,533	+		PP_4702	0.48	-0.8
5,345,534	-		PP_4702	0.48	+0.4
5,345,543	-		PP_4702	0.49	+0.5
5,345,596	+		PP_4702	0.51	-2.6
5,345,597	-		PP_4702	0.51	+0.8
5,345,604	+		PP_4702	0.52	+0.5
5,345,654	-		PP_4702	0.54	-0.2
5,345,654	-		PP_4702	0.54	-1.0
5,345,654	-		PP_4702	0.54	+0.3
5,345,654	-		PP_4702	0.54	-2.1
5,345,782	+		PP_4702	0.61	+1.0
5,345,782	+		PP_4702	0.61	-1.7
5,345,823	+		PP_4702	0.63	-0.5
5,345,823	+		PP_4702	0.63	+1.1
5,345,823	+		PP_4702	0.63	-2.5
5,345,823	+		PP_4702	0.63	+0.2
5,346,022	+		PP_4702	0.73	-2.0
5,346,023	-		PP_4702	0.73	+0.9
5,346,052	+		PP_4702	0.75	+0.4
5,346,052	+		PP_4702	0.75	-0.7
5,346,052	+		PP_4702	0.75	+0.4
5,346,053	-		PP_4702	0.75	-1.0
5,346,053	-		PP_4702	0.75	+0.5
5,346,053	-		PP_4702	0.75	+1.2
5,346,074	-		PP_4702	0.76	+1.0
5,346,076	+		PP_4702	0.76	+1.3
5,346,076	+		PP_4702	0.76	-1.1
5,346,076	+		PP_4702	0.76	-0.6
5,346,118	+		PP_4702	0.78	-2.0
5,346,118	+		PP_4702	0.78	+0.8
5,346,238	+		PP_4702	0.84	-0.1
5,346,268	+		PP_4702	0.86	+0.1
5,346,269	-		PP_4702	0.86	+1.0
5,346,429	+				-2.7
5,346,430	-				-0.3
5,346,430	-				-0.5
5,346,430	-				-0.8
5,346,430	-				+0.9
5,346,430	-				-1.1
5,346,431	+				+0.2
5,346,431	+				+1.1
5,346,432	-				-0.2
5,346,475	-				+1.0
5,346,504	-				-0.3
5,346,504	-				+1.2
5,346,565	+				-0.3
5,346,695	+		PP_4703	0.13	-0.5
5,346,696	-		PP_4703	0.13	-1.0
5,346,696	-		PP_4703	0.13	+1.2
5,346,698	+		PP_4703	0.14	-0.3
5,346,698	+		PP_4703	0.14	-1.2
5,346,698	+				+1.0
5,346,698	+		PP_4703	0.14	-0.7
5,346,699	-		PP_4703	0.14	+0.4
5,346,917	+		PP_4703	0.39	-0.8
5,346,918	-		PP_4703	0.39	+0.9
5,346,961	-		PP_4703	0.44	+0.9
5,347,000	+		PP_4703	0.48	+0.9
5,347,001	-		PP_4703	0.49	+1.9
5,347,077	+		PP_4703	0.57	+0.1
5,347,077	+		PP_4703	0.57	-0.7
5,347,078	-		PP_4703	0.57	+0.1
5,347,078	-		PP_4703	0.57	+0.4
5,347,080	+		PP_4703	0.58	+0.4
5,347,080	+		PP_4703	0.58	+0.5
5,347,080	+		PP_4703	0.58	-2.3
5,347,080	+		PP_4703	0.58	-1.7
5,347,081	-		PP_4703	0.58	+0.4
5,347,155	+		PP_4703	0.66	-0.6
5,347,155	+		PP_4703	0.66	-1.8
5,347,156	-		PP_4703	0.66	+0.4
5,347,156	-		PP_4703	0.66	-1.6
5,347,169	-		PP_4703	0.68	+1.3
5,347,169	-		PP_4703	0.68	-0.7
5,347,480	-				+1.2
5,347,489	+				+0.7
5,347,489	+				+0.4
5,347,490	-				+1.1
5,347,490	-				+1.3
5,347,509	-				-0.2
5,347,530	+				-0.5
5,347,530	+				-0.3
5,347,530	+				-1.2
5,347,530	+				+0.7
5,347,531	-				-0.2
5,347,531	-				-0.9
5,347,531	-				+0.0
5,347,531	-				+0.4
5,347,531	-				-0.7
5,347,531	-				-0.4