Strain Fitness in Pseudomonas putida KT2440 around PP_4587

Experiment: 3-methyl-1-butanol 0.1 vol% (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_4586 and PP_4587 are separated by 41 nucleotidesPP_4587 and PP_4588 are separated by 145 nucleotidesPP_4588 and PP_4589 are separated by 113 nucleotides PP_4586: PP_4586 - conserved exported protein of unknown function, at 5,205,224 to 5,206,432 _4586 PP_4587: PP_4587 - conserved protein of unknown function, at 5,206,474 to 5,206,923 _4587 PP_4588: PP_4588 - putative oxidoreductase (nitroreductase family), at 5,207,069 to 5,207,662 _4588 PP_4589: PP_4589 - D-isomer specific 2-hydroxyacid dehydrogenase family protein, at 5,207,776 to 5,208,708 _4589 Position (kb) 5206 5207Strain fitness (log2 ratio) -2 -1 0 1 2at 5205.530 kb on + strand, within PP_4586at 5205.546 kb on + strand, within PP_4586at 5205.549 kb on + strand, within PP_4586at 5205.550 kb on - strand, within PP_4586at 5205.567 kb on - strand, within PP_4586at 5205.638 kb on - strand, within PP_4586at 5205.678 kb on + strand, within PP_4586at 5205.701 kb on - strand, within PP_4586at 5205.773 kb on + strand, within PP_4586at 5205.773 kb on + strand, within PP_4586at 5205.773 kb on + strand, within PP_4586at 5205.774 kb on - strand, within PP_4586at 5205.774 kb on - strand, within PP_4586at 5206.122 kb on + strand, within PP_4586at 5206.123 kb on - strand, within PP_4586at 5206.161 kb on + strand, within PP_4586at 5206.162 kb on - strand, within PP_4586at 5206.162 kb on - strand, within PP_4586at 5206.199 kb on - strand, within PP_4586at 5206.199 kb on - strand, within PP_4586at 5206.248 kb on + strandat 5206.248 kb on + strand, within PP_4586at 5206.249 kb on - strand, within PP_4586at 5206.249 kb on - strand, within PP_4586at 5206.357 kb on - strandat 5206.357 kb on - strandat 5206.539 kb on + strand, within PP_4587at 5206.539 kb on + strand, within PP_4587at 5206.539 kb on + strand, within PP_4587at 5206.539 kb on + strand, within PP_4587at 5206.539 kb on + strand, within PP_4587at 5206.540 kb on - strandat 5206.540 kb on - strand, within PP_4587at 5206.540 kb on - strand, within PP_4587at 5206.540 kb on - strand, within PP_4587at 5206.650 kb on + strand, within PP_4587at 5206.750 kb on - strand, within PP_4587at 5206.784 kb on + strand, within PP_4587at 5206.784 kb on + strand, within PP_4587at 5206.785 kb on - strand, within PP_4587at 5206.785 kb on - strand, within PP_4587at 5206.785 kb on - strand, within PP_4587at 5206.785 kb on - strand, within PP_4587at 5206.787 kb on + strand, within PP_4587at 5206.787 kb on + strand, within PP_4587at 5206.787 kb on + strand, within PP_4587at 5206.788 kb on - strand, within PP_4587at 5206.788 kb on - strand, within PP_4587at 5206.788 kb on - strand, within PP_4587at 5206.788 kb on - strand, within PP_4587at 5207.032 kb on + strandat 5207.032 kb on + strandat 5207.033 kb on - strandat 5207.213 kb on + strand, within PP_4588at 5207.213 kb on + strand, within PP_4588at 5207.215 kb on + strand, within PP_4588at 5207.215 kb on + strand, within PP_4588at 5207.215 kb on + strand, within PP_4588at 5207.240 kb on + strand, within PP_4588at 5207.240 kb on + strand, within PP_4588at 5207.240 kb on + strand, within PP_4588at 5207.241 kb on - strandat 5207.274 kb on - strand, within PP_4588at 5207.461 kb on + strand, within PP_4588at 5207.462 kb on - strand, within PP_4588at 5207.462 kb on - strand, within PP_4588at 5207.525 kb on + strand, within PP_4588at 5207.526 kb on - strand, within PP_4588at 5207.530 kb on - strand, within PP_4588at 5207.530 kb on - strand, within PP_4588at 5207.530 kb on - strand, within PP_4588at 5207.661 kb on - strandat 5207.717 kb on + strandat 5207.733 kb on + strandat 5207.780 kb on + strandat 5207.781 kb on - strandat 5207.828 kb on + strandat 5207.828 kb on + strandat 5207.828 kb on + strandat 5207.828 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 3-methyl-1-butanol 0.1 vol% (C)
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5,205,530 + PP_4586 0.25 -1.8
5,205,546 + PP_4586 0.27 -2.3
5,205,549 + PP_4586 0.27 -0.8
5,205,550 - PP_4586 0.27 -1.1
5,205,567 - PP_4586 0.28 -0.6
5,205,638 - PP_4586 0.34 -1.2
5,205,678 + PP_4586 0.38 -0.9
5,205,701 - PP_4586 0.39 +0.9
5,205,773 + PP_4586 0.45 -0.7
5,205,773 + PP_4586 0.45 -0.7
5,205,773 + PP_4586 0.45 -0.6
5,205,774 - PP_4586 0.45 +0.5
5,205,774 - PP_4586 0.45 +0.2
5,206,122 + PP_4586 0.74 -0.0
5,206,123 - PP_4586 0.74 -0.9
5,206,161 + PP_4586 0.78 -2.7
5,206,162 - PP_4586 0.78 +0.7
5,206,162 - PP_4586 0.78 -1.6
5,206,199 - PP_4586 0.81 -0.4
5,206,199 - PP_4586 0.81 +0.5
5,206,248 + +0.7
5,206,248 + PP_4586 0.85 -0.1
5,206,249 - PP_4586 0.85 +1.0
5,206,249 - PP_4586 0.85 -0.5
5,206,357 - -0.6
5,206,357 - -0.3
5,206,539 + PP_4587 0.14 +0.5
5,206,539 + PP_4587 0.14 -0.6
5,206,539 + PP_4587 0.14 -1.2
5,206,539 + PP_4587 0.14 +1.1
5,206,539 + PP_4587 0.14 -0.9
5,206,540 - -0.0
5,206,540 - PP_4587 0.15 -0.9
5,206,540 - PP_4587 0.15 +1.7
5,206,540 - PP_4587 0.15 +0.3
5,206,650 + PP_4587 0.39 +0.4
5,206,750 - PP_4587 0.61 +0.7
5,206,784 + PP_4587 0.69 +0.0
5,206,784 + PP_4587 0.69 +0.2
5,206,785 - PP_4587 0.69 +1.6
5,206,785 - PP_4587 0.69 +1.0
5,206,785 - PP_4587 0.69 +1.2
5,206,785 - PP_4587 0.69 -1.5
5,206,787 + PP_4587 0.70 +0.5
5,206,787 + PP_4587 0.70 +0.1
5,206,787 + PP_4587 0.70 -0.7
5,206,788 - PP_4587 0.70 +0.7
5,206,788 - PP_4587 0.70 +0.6
5,206,788 - PP_4587 0.70 +0.6
5,206,788 - PP_4587 0.70 +1.7
5,207,032 + +2.1
5,207,032 + +0.8
5,207,033 - -0.7
5,207,213 + PP_4588 0.24 -0.7
5,207,213 + PP_4588 0.24 -0.3
5,207,215 + PP_4588 0.25 +0.1
5,207,215 + PP_4588 0.25 +0.6
5,207,215 + PP_4588 0.25 +1.1
5,207,240 + PP_4588 0.29 +0.6
5,207,240 + PP_4588 0.29 +1.5
5,207,240 + PP_4588 0.29 +0.2
5,207,241 - +0.5
5,207,274 - PP_4588 0.35 +1.3
5,207,461 + PP_4588 0.66 -0.8
5,207,462 - PP_4588 0.66 +1.1
5,207,462 - PP_4588 0.66 +1.5
5,207,525 + PP_4588 0.77 +0.5
5,207,526 - PP_4588 0.77 +1.3
5,207,530 - PP_4588 0.78 +1.2
5,207,530 - PP_4588 0.78 +1.3
5,207,530 - PP_4588 0.78 +1.4
5,207,661 - +0.7
5,207,717 + +1.5
5,207,733 + +1.0
5,207,780 + +2.1
5,207,781 - +1.2
5,207,828 + +0.7
5,207,828 + -0.9
5,207,828 + -1.4
5,207,828 + +0.0

Or see this region's nucleotide sequence