Strain Fitness in Pseudomonas putida KT2440 around PP_4579

Experiment: 3-methyl-1-butanol 0.1 vol% (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_4578 and PP_4579 are separated by 130 nucleotidesPP_4579 and PP_4580 are separated by 72 nucleotidesPP_4580 and PP_4581 are separated by 9 nucleotides PP_4578: PP_4578 - Major facilitator family transporter, at 5,197,297 to 5,198,583 _4578 PP_4579: PP_4579 - Transcriptional regulator, LysR family, at 5,198,714 to 5,199,625 _4579 PP_4580: PP_4580 - conserved protein of unknown function, at 5,199,698 to 5,200,219 _4580 PP_4581: PP_4581 - putative amidotransferase, at 5,200,229 to 5,201,002 _4581 Position (kb) 5198 5199 5200Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 5197.715 kb on + strand, within PP_4578at 5197.715 kb on + strand, within PP_4578at 5197.715 kb on + strand, within PP_4578at 5197.715 kb on + strand, within PP_4578at 5197.715 kb on + strand, within PP_4578at 5197.715 kb on + strand, within PP_4578at 5197.716 kb on - strand, within PP_4578at 5197.716 kb on - strand, within PP_4578at 5197.716 kb on - strand, within PP_4578at 5197.742 kb on + strand, within PP_4578at 5197.742 kb on + strand, within PP_4578at 5197.742 kb on + strand, within PP_4578at 5197.743 kb on - strand, within PP_4578at 5197.743 kb on - strand, within PP_4578at 5197.814 kb on + strand, within PP_4578at 5197.814 kb on + strand, within PP_4578at 5197.814 kb on + strand, within PP_4578at 5197.815 kb on - strand, within PP_4578at 5197.817 kb on + strand, within PP_4578at 5197.892 kb on + strand, within PP_4578at 5197.940 kb on + strand, within PP_4578at 5197.940 kb on + strand, within PP_4578at 5198.060 kb on + strand, within PP_4578at 5198.228 kb on + strand, within PP_4578at 5198.229 kb on - strand, within PP_4578at 5198.229 kb on - strand, within PP_4578at 5198.293 kb on - strand, within PP_4578at 5198.341 kb on + strand, within PP_4578at 5198.342 kb on - strand, within PP_4578at 5198.342 kb on - strand, within PP_4578at 5198.418 kb on + strand, within PP_4578at 5198.419 kb on - strand, within PP_4578at 5198.490 kb on + strandat 5198.490 kb on + strandat 5198.550 kb on + strandat 5198.551 kb on - strandat 5198.603 kb on + strandat 5198.612 kb on - strandat 5198.905 kb on - strand, within PP_4579at 5198.905 kb on - strand, within PP_4579at 5198.905 kb on - strand, within PP_4579at 5198.913 kb on - strand, within PP_4579at 5199.007 kb on + strand, within PP_4579at 5199.007 kb on + strand, within PP_4579at 5199.008 kb on - strand, within PP_4579at 5199.008 kb on - strand, within PP_4579at 5199.139 kb on + strand, within PP_4579at 5199.139 kb on + strand, within PP_4579at 5199.139 kb on + strand, within PP_4579at 5199.140 kb on - strand, within PP_4579at 5199.140 kb on - strand, within PP_4579at 5199.140 kb on - strand, within PP_4579at 5199.245 kb on + strand, within PP_4579at 5199.245 kb on + strand, within PP_4579at 5199.246 kb on - strand, within PP_4579at 5199.246 kb on - strandat 5199.246 kb on - strand, within PP_4579at 5199.682 kb on - strandat 5199.688 kb on - strandat 5199.827 kb on + strand, within PP_4580at 5199.843 kb on + strand, within PP_4580at 5199.843 kb on + strand, within PP_4580at 5199.844 kb on - strand, within PP_4580at 5199.850 kb on - strand, within PP_4580at 5199.890 kb on + strand, within PP_4580at 5200.138 kb on - strand, within PP_4580at 5200.138 kb on - strand, within PP_4580at 5200.138 kb on - strand, within PP_4580at 5200.206 kb on + strandat 5200.207 kb on - strandat 5200.231 kb on - strandat 5200.231 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 3-methyl-1-butanol 0.1 vol% (C)
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5,197,715 + PP_4578 0.32 +1.3
5,197,715 + PP_4578 0.32 +0.8
5,197,715 + PP_4578 0.32 +3.0
5,197,715 + PP_4578 0.32 +1.2
5,197,715 + PP_4578 0.32 +0.6
5,197,715 + PP_4578 0.32 +1.3
5,197,716 - PP_4578 0.33 +3.3
5,197,716 - PP_4578 0.33 +1.0
5,197,716 - PP_4578 0.33 -3.0
5,197,742 + PP_4578 0.35 +1.8
5,197,742 + PP_4578 0.35 +0.6
5,197,742 + PP_4578 0.35 +1.6
5,197,743 - PP_4578 0.35 +2.4
5,197,743 - PP_4578 0.35 +1.5
5,197,814 + PP_4578 0.40 +1.9
5,197,814 + PP_4578 0.40 +3.0
5,197,814 + PP_4578 0.40 +2.3
5,197,815 - PP_4578 0.40 +1.6
5,197,817 + PP_4578 0.40 +2.5
5,197,892 + PP_4578 0.46 +2.1
5,197,940 + PP_4578 0.50 +1.3
5,197,940 + PP_4578 0.50 +0.9
5,198,060 + PP_4578 0.59 +2.7
5,198,228 + PP_4578 0.72 +2.2
5,198,229 - PP_4578 0.72 +1.4
5,198,229 - PP_4578 0.72 +1.2
5,198,293 - PP_4578 0.77 +0.8
5,198,341 + PP_4578 0.81 +2.1
5,198,342 - PP_4578 0.81 +2.2
5,198,342 - PP_4578 0.81 +2.1
5,198,418 + PP_4578 0.87 +1.8
5,198,419 - PP_4578 0.87 -0.1
5,198,490 + +1.4
5,198,490 + +1.4
5,198,550 + +1.5
5,198,551 - +0.8
5,198,603 + +2.0
5,198,612 - +2.4
5,198,905 - PP_4579 0.21 +1.1
5,198,905 - PP_4579 0.21 +1.4
5,198,905 - PP_4579 0.21 +2.4
5,198,913 - PP_4579 0.22 +1.6
5,199,007 + PP_4579 0.32 +1.6
5,199,007 + PP_4579 0.32 +2.3
5,199,008 - PP_4579 0.32 +0.9
5,199,008 - PP_4579 0.32 +0.9
5,199,139 + PP_4579 0.47 +1.8
5,199,139 + PP_4579 0.47 +2.4
5,199,139 + PP_4579 0.47 +1.7
5,199,140 - PP_4579 0.47 +1.8
5,199,140 - PP_4579 0.47 +2.9
5,199,140 - PP_4579 0.47 +2.3
5,199,245 + PP_4579 0.58 +2.0
5,199,245 + PP_4579 0.58 +1.7
5,199,246 - PP_4579 0.58 +1.1
5,199,246 - +3.1
5,199,246 - PP_4579 0.58 +2.1
5,199,682 - +0.3
5,199,688 - +0.0
5,199,827 + PP_4580 0.25 -1.4
5,199,843 + PP_4580 0.28 -1.0
5,199,843 + PP_4580 0.28 -2.3
5,199,844 - PP_4580 0.28 +0.3
5,199,850 - PP_4580 0.29 -0.3
5,199,890 + PP_4580 0.37 -0.2
5,200,138 - PP_4580 0.84 -1.5
5,200,138 - PP_4580 0.84 -0.6
5,200,138 - PP_4580 0.84 -0.5
5,200,206 + -0.7
5,200,207 - -4.0
5,200,231 - +2.2
5,200,231 - +1.7

Or see this region's nucleotide sequence