Strain Fitness in Pseudomonas putida KT2440 around PP_4547

Experiment: 3-methyl-1-butanol 0.1 vol% (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-1-butanol 0.1 vol% (C)
5,167,399	+		PP_4546	0.88	+1.6
5,167,400	-		PP_4546	0.88	-1.4
5,167,400	-		PP_4546	0.88	-1.0
5,167,492	+				-0.7
5,167,617	-				-1.7
5,167,617	-				+0.1
5,167,688	+				+3.6
5,167,689	-				-1.1
5,167,890	-				-0.3
5,168,009	-				+0.5
5,168,076	+				+0.3
5,168,109	-				+0.7
5,168,367	+				-1.0
5,168,368	-				-0.0
5,168,399	+				+0.1
5,168,400	-				+1.2
5,168,522	-		PP_4547	0.10	-1.1
5,168,522	-		PP_4547	0.10	-1.5
5,168,633	-		PP_4547	0.18	+0.7
5,168,788	+		PP_4547	0.30	-1.5
5,168,788	+		PP_4547	0.30	-0.2
5,168,788	+		PP_4547	0.30	+0.3
5,168,789	-		PP_4547	0.30	+0.3
5,168,821	+		PP_4547	0.32	-1.2
5,168,822	-		PP_4547	0.32	-0.2
5,168,822	-		PP_4547	0.32	-2.5
5,168,822	-		PP_4547	0.32	-1.1
5,168,908	+		PP_4547	0.38	-1.4
5,168,908	+		PP_4547	0.38	+0.9
5,168,909	-		PP_4547	0.39	-0.8
5,168,909	-		PP_4547	0.39	+0.9
5,168,957	-		PP_4547	0.42	+0.6
5,168,957	-		PP_4547	0.42	-2.4
5,169,080	-		PP_4547	0.51	-0.4
5,169,346	+		PP_4547	0.71	-0.3
5,169,346	+		PP_4547	0.71	-0.0
5,169,347	-		PP_4547	0.71	-0.3
5,169,347	-		PP_4547	0.71	-0.4
5,169,347	-		PP_4547	0.71	+0.1
5,169,347	-		PP_4547	0.71	+0.8
5,169,467	-		PP_4547	0.79	-1.8
5,169,553	+		PP_4547	0.86	-0.3
5,169,554	-		PP_4547	0.86	-2.5
5,169,730	+				-1.0
5,169,753	+				+0.9
5,169,753	+				-2.4
5,169,754	-				-0.8
5,169,757	+				-2.9
5,169,757	+				-0.9
5,169,758	-				+0.4
5,169,758	-				-0.5
5,169,758	-				-1.7
5,169,758	-				+0.3
5,169,817	+				+0.3
5,169,817	+				-0.8
5,169,817	+				-0.2
5,169,818	-				+2.3
5,169,818	-				-1.4
5,169,820	+				-1.7
5,169,820	+				-0.3
5,169,820	+				+0.6
5,169,820	+				-0.3
5,169,820	+				-0.1
5,169,821	-				-1.9
5,169,821	-				+1.4
5,169,821	-				+0.5
5,169,821	-				-0.2
5,169,907	-		PP_4548	0.10	+0.8
5,170,312	+		PP_4548	0.41	-1.2
5,170,312	+		PP_4548	0.41	-1.4
5,170,313	-		PP_4548	0.41	-1.7
5,170,516	+		PP_4548	0.57	+0.4
5,170,516	+		PP_4548	0.57	-3.0
5,170,517	-		PP_4548	0.57	-1.0
5,170,517	-		PP_4548	0.57	-1.0
5,170,636	+		PP_4548	0.66	-0.9
5,170,637	-		PP_4548	0.66	-0.1
5,170,637	-		PP_4548	0.66	+0.6
5,170,660	+		PP_4548	0.68	-0.7
5,170,660	+		PP_4548	0.68	-2.1
5,170,661	-		PP_4548	0.68	-0.4
5,170,661	-		PP_4548	0.68	-0.2
5,170,663	+		PP_4548	0.68	-0.1
5,170,663	+		PP_4548	0.68	-1.0
5,170,664	-		PP_4548	0.68	-3.6
5,170,711	+		PP_4548	0.72	-0.4
5,170,711	+		PP_4548	0.72	-0.5
5,170,712	-		PP_4548	0.72	+0.4
5,170,712	-		PP_4548	0.72	-0.1
5,170,712	-		PP_4548	0.72	+1.4
5,170,712	-		PP_4548	0.72	+0.2